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Bringing confidence to species identification : probabilistic and proteogenomic approaches for single organism samples and metaproteomes
(2025) -
Epitope Odyssey : data-driven tools to extend the known immunopeptide universe
(2025) -
Novel statistical strategies for differential PTM abundance analysis in proteomics
(2024) -
A tale of tissue and text : predictive proteome profiling and managing metadata mayhem
(2024) -
- PhD Thesis
- open access
Building the Unipept Ecosystem : empowering high-throughput metaproteomics data analysis for characterizing complex microbial communities
(2023) -
- PhD Thesis
- open access
Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods
(2022) -
Data mining and modelling to understand cell migration heterogeneity and plasticity
(2022) -
Benchmark and improving methods in metaproteomics informatics
(2022) -
Uncovering new knowledge on protein post-translational modifications by large-scale reprocessing and analysis of public proteomics data
(2022) -
- PhD Thesis
- open access
The difference is in the details : predicting the LC-IM-MS behaviour of metabolites and peptides
(2020)