Ghent University Academic Bibliography

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msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level

Nina Demeulemeester, Marie Gébelin, Lucas Caldi Gomes, Paul Lingor, Christine Carapito, Lennart Martens (UGent) and Lieven Clement (UGent)

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(2).
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Exploring the microbial response as a potential bio-indicator for soil health : insights from a controlled incubator experiment

Lisa Joos (UGent) , Caroline De Tender (UGent) , Astrid Holderbeke, Lieven Clement (UGent) , Bart Vandecasteele and Jane Debode

(2023) AGRICULTURE ECOSYSTEMS & ENVIRONMENT. 356.
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Quality control for the target decoy approach for peptide identification

Elke Debrie, Milan Malfait, Ralf Gabriels (UGent) , Arthur Declercq (UGent) , Adriaan Sticker, Lennart Martens (UGent) and Lieven Clement (UGent)

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.350-358
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An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

Lien Provez, Bart Van Puyvelde (UGent) , Laura Corveleyn (UGent) , Nina Demeulemeester, Sigrid Verhelst (UGent) , Beatrice Lintermans, Simon Daled (UGent) , Juliette Roels (UGent) , Lieven Clement (UGent) , Lennart Martens (UGent) , et al.

(2022) SCIENTIFIC DATA. 9(1).
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satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications

Jeroen Gilis, Kristoffer Vitting-Seerup, Koen Van den Berge (UGent) and Lieven Clement (UGent)

(2021) F1000RESEARCH. 10.
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Altering the sex pheromone cyclo(L-Pro-L-Pro) of the diatom Seminavis robusta towards a chemical probe

Eli Bonneure (UGent) , Amber De Baets, Sam De Decker, Koen Van den Berge (UGent) , Lieven Clement (UGent) , Wim Vyverman (UGent) and Sven Mangelinckx (UGent)

(2021) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 22(3).
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Chitin in strawberry cultivation : foliar growth and defense response promotion, but reduced fruit yield and disease resistance by nutrient imbalances

Caroline De Tender (UGent) , Bart Vandecasteele, Bruno Verstraeten (UGent) , Sarah Ommeslag, Tim De Meyer (UGent) , Jill De Visscher (UGent) , Peter Dawyndt (UGent) , Lieven Clement (UGent) , Tina Kyndt (UGent) and Jane Debode

(2021) MOLECULAR PLANT-MICROBE INTERACTIONS. 34(3). p.227-239
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Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta

Gust Bilcke (UGent) , Koen Van den Berge (UGent) , Sam De Decker, Eli Bonneure (UGent) , Nicole Poulsen, Petra Bulánková (UGent) , Cristina Osuna, Jack Dickenson, Koen Sabbe (UGent) , Georg Pohnert, et al.

(2021) ISME JOURNAL. 15. p.562-576
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Daring to be differential : metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units

Lisa Joos (UGent) , Stien Beirinckx, Annelies Haegeman, Jane Debode, Bart Vandecasteele, Steve Baeyen, Sofie Goormachtig (UGent) , Lieven Clement (UGent) and Caroline De Tender (UGent)

(2020) BMC GENOMICS. 21(1).
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MSqRob takes the missing hurdle : uniting intensity- and count-based proteomics

Ludger Goeminne, Adriaan Sticker, Lennart Martens (UGent) , Kris Gevaert (UGent) and Lieven Clement (UGent)

(2020) ANALYTICAL CHEMISTRY. 92(9). p.6278-6287

Academic Bibliography

msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level

Exploring the microbial response as a potential bio-indicator for soil health : insights from a controlled incubator experiment

Quality control for the target decoy approach for peptide identification

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

satuRn: Scalable analysis of differential transcript usage for bulk and single-cell RNA-sequencing applications

Altering the sex pheromone cyclo(L-Pro-L-Pro) of the diatom Seminavis robusta towards a chemical probe

Chitin in strawberry cultivation : foliar growth and defense response promotion, but reduced fruit yield and disease resistance by nutrient imbalances

Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta

Daring to be differential : metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units

MSqRob takes the missing hurdle : uniting intensity- and count-based proteomics

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