Show
Sort by
-
- Journal Article
- A1
- open access
MYCN and SNRPD3 cooperate to maintain a balance of alternative splicing events that drives neuroblastoma progression
-
- Journal Article
- A1
- open access
Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma
-
- Journal Article
- A1
- open access
Evaluation of single-sample network inference methods for precision oncology
-
- Journal Article
- A1
- open access
SOX11 regulates SWI/SNF complex components as member of the adrenergic neuroblastoma core regulatory circuitry
-
- Journal Article
- A1
- open access
Memory of stochastic single-cell apoptotic signaling promotes chemoresistance in neuroblastoma
-
- Journal Article
- A1
- open access
Cell-free DNA as a diagnostic and prognostic biomarker in pediatric rhabdomyosarcoma
-
Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
-
- Conference Paper
- C3
- open access
Dramatic impact of blood collection tube and RNA purification method on extracellular RNA transcriptomes
-
Towards the discovery of prognostic and predictive biomarkers in CHEERS, a radioimmunotherapy phase II trial
-
Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors
-
- Journal Article
- A2
- open access
Opportunities and challenges in interpretable deep learning for drug sensitivity prediction of cancer cells
-
- Miscellaneous
- open access
When DNA gets in the way in RNA-seq experiments, a sequel
-
- Journal Article
- A1
- open access
RRM2 enhances MYCN-driven neuroblastoma formation and acts as a synergistic target with CHK1 inhibition
-
The RNA Atlas expands the catalog of human non-coding RNAs
-
- Journal Article
- A1
- open access
MEIS2 is an adrenergic core regulatory transcription factor involved in early initiation of TH-MYCN-driven neuroblastoma formation
-
The functional annotation and exploration the SOX11 enhanceosome
-
Long noncoding RNA SILC1 is an upstream regulator of SOX11 in neuroblastoma
-
When DNA gets in the way : a cautionary note for DNA contamination in extracellular RNA-seq studies
(2020) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(32). p.18934-18936 -
- Journal Article
- A1
- open access
Benchmarking of cell type deconvolution pipelines for transcriptomics data
-
- Journal Article
- A1
- open access
The pitfalls and promise of liquid biopsies for diagnosing and treating solid tumors in children : a review
-
- Journal Article
- A1
- open access
The ETS transcription factor ETV5 is a target of activated ALK in neuroblastoma contributing to increased tumour aggressiveness
-
DREAM target reactivation by core transcriptional regulators supports neuroblastoma growth
-
SOX11 is a key epigenetic regulator in the adrenergic MYCN amplified neuroblastoma
-
SOX11 as mediator of the adrenergic cell state in NB
-
SOX11 is a key epigenetic regulator in the adrenergic MYCN amplified neuroblastoma
-
Shallow whole genome sequencing on circulating cell-free DNA in pediatric cancer patients
-
Shallow whole genome sequencing on circulating cell-free DNA in pediatric cancer patients
-
Successful copy number alteration profiling using circulating cell-free tumor DNA as a non-invasive alternative for tissue biopsies in pediatric cancer patients
-
- Journal Article
- A1
- open access
Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes
-
Exploring the contribution of gene dosage effects of 17q gain genes on hESC and neuroblastoma proliferation
-
Searching for liquid RNA biomarkers for esophageal adenocarcinoma
-
ALK positively regulates MYCN activity through repression of HBP1 expression
-
17q gain provides proliferative advantage to human embryonic stem cells under replicative stress
-
- Conference Paper
- C3
- open access
RNA-based liquid biopsies for better clinical management of Barrett’s esophagus and esophageal adenocarcinoma
-
Benchmarking the impact of data transformation, pre-processing and choice of method in the computational deconvolution of transcriptomics data
-
The core regulatory circuit component TBX2 is implicated in cell cycle control and proliferation in neuroblastoma
-
SOX11 is a transcriptional circuit dosage sensitive transcription factor controlling SWI/SNF components
-
The core regulatory circuit component TBX2 is implicated in cell cycle control and proliferation in neuroblastoma
-
TBX2 is implicated in cell cycle control and proliferation in neuroblastoma
-
LDHA in neuroblastoma is associated with poor outcome and its depletion decreases neuroblastoma growth independent of aerobic glycolysis
-
Non-invasive differential diagnosis of neuroblastoma with other paediatric solid tumors using methylation profiling of circulating cell-free DNA
-
Network modeling of microRNA-mRNA interactions in neuroblastoma tumorigenesis identifies miR-204 as a direct inhibitor of MYCN
-
Promoter-associated proteins of EPAS1 identified by enChIP-MS : a putative role of HDX as a negative regulator
-
- Conference Paper
- C3
- open access
Exploring the contribution of gene dosage effects of 17q gain on ESC and neuroblastoma proliferation
-
Zipper plot : visualizing transcriptional activity of genomic regions
-
Exploring the contribution of gene dosage effects of 17Q gain on ESC and neuroblastoma proliferation
-
- Conference Paper
- C3
- open access
Exploring the contribution of gene dosage effects of 17q gain on ESC and neuroblastoma proliferation
-
LDHA predicts poor survival in neuroblastoma and its depletion causes aerobic glycolysis-independent inhibition of neuroblastoma cells
-
Shallow whole genome sequencing allows successful copy number profiling in formalin-fixed paraffin-embedded material in neuroblastoma patients
-
Single CTC enrichment and isolation using Parsortix and DEPArray NxT
-
- Journal Article
- A1
- open access
In silico discovery of a FOXM1 driven embryonal signaling pathway in therapy resistant neuroblastoma tumors
-
Assessing the biological signal of different RNA fractions for computational deconvolution of healthy tissues
-
Exploring the contribution of gene dosage effects of 17q gain genes on hESC and neuroblastoma proliferation
-
Circulating microRNA biomarkers for metastatic disease in neuroblastoma patients
-
Circulating microRNA biomarkers for metastatic neuroblastoma
-
Integrated proximal proteomics reveals IRS2 as a determinant of cell survival in ALK-driven neuroblastoma
-
- Journal Article
- A1
- open access
Data Descriptor: Meta-mining of copy number profiles of high-risk neuroblastoma tumors
-
Non-invasive differential diagnosis of neuroblastoma with other paediatric solid tumors using methylation profiling of circulating cell-free DNA
-
Non-invasive differential diagnosis of neuroblastoma with other paediatric solid tumors using methylation profiling of circulating cell-free DNA
-
- Journal Article
- A1
- open access
TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets
-
- Journal Article
- A1
- open access
Biallelic and monoallelic ESR2 variants associated with 46,XY disorders of sex development
-
Cross-cohort analysis identifies a TEAD4-MYCN positive-feedback loop as the core regulatory element of high-risk neuroblastoma
-
Computational deconvolution of transcriptomics data from mixed cell populations
-
The extracellular RNA quality control (exRNAQC) study : controlling pre-analytical variables of RNA sequencing in blood-based precision medicine
-
- Journal Article
- A2
- open access
The mutational landscape of MYCN, Lin28b and ALKF1174L driven murine neuroblastoma mimics human disease
-
- Journal Article
- A1
- open access
Genomic amplifications and distal 6q loss : novel markers for poor survival in high-risk neuroblastoma patients
-
- Journal Article
- A1
- open access
Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations
-
The extracellular RNA quality control (exRNAQC) study : controlling pre-analytical variables of RNA sequencing in blood-based precision medicine
-
Shallow whole genome sequencing on circulating cell-free DNA allows reliable noninvasive copy-number profiling in neuroblastoma patients
-
SOX11 acts as part of the MYCN-WEE1 regulatory protein complex implicated in neuroblastoma
-
The core regulatory circuit component TBX2 is implicated in cell cycle control and proliferation in neuroblastoma
-
RRM2 is an essential and druggable component of the FOXM1 driven replicative stress DNA damage response in neuroblastoma
-
RRM2 is an essential and druggable component of the FOXM1 driven replicative stress DNA damage response in neuroblastoma
-
SOX11 acts as part of the MYCN-WEE1 regulatory protein complex implicated in neuroblastoma
-
Optimizing a workflow for transcriptome analysis of CTCs isolated from venous blood
-
Shallow whole genome sequencing on circulating cell-free DNA allows reliable non-invasive copy number profiling in neuroblastoma patients
-
The HBP1 tumor suppressor is a negative epigenetic regulator of MYCN driven neuroblastoma through interaction with the PRC2 complex
-
BRD3 as a specific vulnerable therapeutic target in neuroblastoma
-
Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations
-
Identification of novel, rare markers for poor survival in high-risk neuroblastoma patients by merging and reanalysing existing datasets
-
Genomic amplifications and distal 6q loss are novel markers for poor survival in high-risk neuroblastoma patients
-
- Journal Article
- A1
- open access
The immunophenotypic fingerprint of patients with primary antibody deficiencies is partially present in their asymptomatic first-degree relatives
-
- Journal Article
- A1
- open access
Zipper plot : visualizing transcriptional activity of genomic regions
-
The ETV5 oncogene is a target of activated ALK signaling in neuroblastoma
-
The ETV5 oncogene is a target of activated ALK signaling in neuroblastoma
-
Mapping the genomic landscape of inherited retinal disease genes prioritizes genes prone to coding and noncoding copy-number variations
-
HBP1 is a negative epigenetic regulator of MYCN-driven neuroblastoma through interaction with the PRC2 complex
-
The HBP1 tumour suppressor is a negative epigenetic regulator of MYCN-driven neuroblastoma through interaction with the PRC2 complex
-
- Journal Article
- A1
- open access
Early and late effects of pharmacological ALK inhibition on the neuroblastoma transcriptome
-
- Journal Article
- A1
- open access
Targeting tachykinin receptors in neuroblastoma
-
The TBX2 super-enhancer marked transcription factor on 17q is overexpressed in neuroblastoma and infers poor prognosis
-
SOX11 acts as part of the MYCN regulatory protein complex implicated in neuroblastoma
-
The TBX2 super-enhancer marked transcription factor on 17q is overexpressed in neuroblastoma and infers poor prognosis
-
The chromosome 17q super-enhancer landscape in neuroblastoma
-
Optimization of a lentiviral inducible CRISPR/Cas9 system to modulate genes essential for sustained growth of cells
-
The BRIP1/FANCJ DNA helicase is a druggable 17q driver oncogene involved in G-quadruplex induced replicative stress resistance in neuroblastoma
-
The genomic region encompassing the overlapping SOX11 and Lnc-SOX11-1:1 loci exhibits a complex DNA copy number and mRNA expression pattern
-
An embryonic stem cell activated FOXM1 transcriptional program marks ultra-high-risk primary neuroblastoma patients for FDI-6 small molecule inhibition
-
Detection of copy number aberrations in cell free DNA from plasma of neuroblastoma patients using shallow massive parallel sequencing
-
Unbiased modelling of dynamic processes with single-cell RNA-sequencing