Ghent University Academic Bibliography

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MEXPRESS update 2019

Alexander Koch, Jana Jeschke, Wim Van Criekinge (UGent) , Manon van Engeland and Tim De Meyer (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(W1). p.W561-W565
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DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns

Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(6).
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Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques

Ralf Gabriels (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(W1). p.W295-W299
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WisecondorX : improved copy number detection for routine shallow whole-genome sequencing

Lennart Raman (UGent) , Annelies Dheedene (UGent) , Matthias De Smet (UGent) , Jo Van Dorpe (UGent) and Björn Menten (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(4). p.1605-1614
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LNCipedia 5 : towards a reference set of human long non-coding RNAs

Pieter-Jan Volders (UGent) , Jasper Anckaert (UGent) , Kenneth Verheggen (UGent) , Justine Nuytens (UGent) , Lennart Martens (UGent) , Pieter Mestdagh (UGent) and Jo Vandesompele (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(D1). p.D135-D139
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RNAcentral : a hub of information for non-coding RNA sequences

Blake A Sweeney, Anton I Petrov, Boris Burkov, Robert D Finn, Alex Bateman, Maciej Szymanski, Wojciech M Karlowski, Jan Gorodkin, Stefan E Seemann, Jamie J Cannone, et al.

(2019) NUCLEIC ACIDS RESEARCH. 47(D1). p.D221-D229
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Vesiclepedia 2019 : a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles

Mohashin Pathan, Pamali Fonseka, Sai V Chitti, Taeyoung Kang, Rahul Sanwlani, Jan Van Deun (UGent) , An Hendrix (UGent) and Suresh Mathivanan

(2019) NUCLEIC ACIDS RESEARCH. 47(D1). p.D516-D519
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SMARTer single cell total RNA-sequencing

Karen Verboom (UGent) , Celine Everaert (UGent) , Nathalie Bolduc, Kenneth Livak, Nurten Yigit (UGent) , Dries Rombaut (UGent) , Jasper Anckaert (UGent) , Simon Lee, Morten Venø, Jørgen Kjems, et al.

(2019) NUCLEIC ACIDS RESEARCH. 47(16).
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IAMBEE : a web-service for the identification of adaptive pathways from parallel evolved clonal populations

Camilo Andrés Pérez Romero (UGent) , Bram Weytjens (UGent) , Dries Decap (UGent) , Toon Swings, Jan Michiels, Dries De Maeyer (UGent) and Kathleen Marchal (UGent)

(2019) NUCLEIC ACIDS RESEARCH. 47(W1). p.W151-W157
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An update on sORFs.org : a repository of small ORFs identified by ribosome profiling

Volodimir Olexiouk (UGent) , Wim Van Criekinge (UGent) and Gerben Menschaert (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D497-D502

Academic Bibliography

MEXPRESS update 2019

DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns

Updated MS²PIP web server delivers fast and accurate MS² peak intensity prediction for multiple fragmentation methods, instruments and labeling techniques

WisecondorX : improved copy number detection for routine shallow whole-genome sequencing

LNCipedia 5 : towards a reference set of human long non-coding RNAs

RNAcentral : a hub of information for non-coding RNA sequences

Vesiclepedia 2019 : a compendium of RNA, proteins, lipids and metabolites in extracellular vesicles

SMARTer single cell total RNA-sequencing

IAMBEE : a web-service for the identification of adaptive pathways from parallel evolved clonal populations

An update on sORFs.org : a repository of small ORFs identified by ribosome profiling

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