Ghent University Academic Bibliography

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The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

Dipesh Kumar Singh, Rigel Salinas Gamboa, Avinash Kumar Singh, Birgit Walkemeier, Jelle Van Leene (UGent) , Geert De Jaeger (UGent) , Imran Siddiqi, Raphael Guerois, Wayne Crismani and Raphael Mercier

(2023) Nucleic Acids Research. 51(6). p.2516-2528
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SMAP design: a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

Ward Develtere (UGent) , Evelien Waegneer, Kevin Debray (UGent) , Jonas De Saeger (UGent) , Sabine Van Glabeke, Steven Maere (UGent) , Tom Ruttink (UGent) and Thomas B. Jacobs (UGent)

(2023) Nucleic Acids Research.
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A red light-triggered chemical tool for sequence-specific alkylation of G-quadruplex and I-motif DNA

Enrico Cadoni (UGent) , Lessandro De Paepe (UGent) , Gertjan Colpaert (UGent) , Ruben Tack (UGent) , Dries Waegeman, Alex Manicardi (UGent) and Annemieke Madder (UGent)

(2023) NUCLEIC ACIDS RESEARCH. 51(9). p.4112-4125
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The quest for orthologs Orthology Benchmark Service in 2022

Yannis Nevers, Tamsin E M Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codo, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, et al.

(2022) NUCLEIC ACIDS RESEARCH. 50(W1). p.W623-W632
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PLAZA 5.0 : extending the scope and power of comparative and functional genomics in plants

Michiel Van Bel, Francesca Silvestri (UGent) , Eric M Weitz, Lukasz Kreft, Alexander Botzki (UGent) , Frederik Coppens (UGent) and Klaas Vandepoele (UGent)

(2022) NUCLEIC ACIDS RESEARCH. 50(D1). p.D1468-D1474
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JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez (UGent) , et al.

(2022) NUCLEIC ACIDS RESEARCH. 50(D1). p.D165-D173
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Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing

Heleen Masset, Jia Ding, Eftychia Dimitriadou, Sophie Debrock, Olga Tsuiko, Katrien Smits (UGent) , Karen Peeraer, Thierry Voet, Masoud Zamani Esteki and Joris R. Vermeesch

(2022) NUCLEIC ACIDS RESEARCH. 50(11).
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b2bTools : online predictions for protein biophysical features and their conservation

Luciano Porto Kagami, Gabriele Orlando, Daniele Raimondi, Francois Ancien, Bhawna Dixit (UGent) , Jose Gavaldá-García, Pathmanaban Ramasamy (UGent) , Joel Roca-Martínez, Konstantina Tzavella and Wim Vranken

(2021) NUCLEIC ACIDS RESEARCH. 49(W1). p.W52-W59
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Beyond small molecules : targeting G-quadruplex structures with oligonucleotides and their analogues

Enrico Cadoni (UGent) , Lessandro De Paepe, Alex Manicardi (UGent) and Annemieke Madder (UGent)

(2021) NUCLEIC ACIDS RESEARCH. 49(12). p.6638-6659
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Single cell epigenetic visualization assay

Sam Kint, Wim Van Criekinge (UGent) , Linos Vandekerckhove (UGent) , Winnok H De Vos, Karol Bomsztyk, Diane S Krause and Oleg Denisenko

(2021) NUCLEIC ACIDS RESEARCH. 49(8).

Academic Bibliography

The FANCC–FANCE–FANCF complex is evolutionarily conserved and regulates meiotic recombination

SMAP design: a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

A red light-triggered chemical tool for sequence-specific alkylation of G-quadruplex and I-motif DNA

The quest for orthologs Orthology Benchmark Service in 2022

PLAZA 5.0 : extending the scope and power of comparative and functional genomics in plants

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Single-cell genome-wide concurrent haplotyping and copy-number profiling through genotyping-by-sequencing

b2bTools : online predictions for protein biophysical features and their conservation

Beyond small molecules : targeting G-quadruplex structures with oligonucleotides and their analogues

Single cell epigenetic visualization assay

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