Academic Bibliography

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An update on sORFs.org : a repository of small ORFs identified by ribosome profiling

Volodimir Olexiouk (UGent) , Wim Van Criekinge (UGent) and Gerben Menschaert (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D497-D502
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A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Indra Bervoets, Maarten Van Brempt (UGent) , Katleen Van Nerom, Bob Van Hove (UGent) , Jo Maertens (UGent) , Marjan De Mey (UGent) and Daniel Charlier

(2018) NUCLEIC ACIDS RESEARCH.
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JASPAR 2018 : update of the open-access database of transcription factor binding profiles and its web framework

Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime A Castro-Mondragon, Robin van der Lee, Adrien Bessy, Jeanne Cheneby, Shubhada Rajabhau Kulkarni (UGent) , Ge Tan, et al.

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D260-D266
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TF2Network : predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information

Shubhada Rajabhau Kulkarni (UGent) , Dries Vaneechoutte (UGent) , Jan Van de Velde (UGent) and Klaas Vandepoele (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(6).
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The online Tabloid Proteome : an annotated database of protein associations

Surya Gupta (UGent) , Demet Turan (UGent) , Jan Tavernier (UGent) and Lennart Martens (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D581-D585
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Capturing the ‘ome’ : the expanding molecular toolbox for RNA and DNA library construction

Morgane Boone (UGent) , Andries De Koker (UGent) and Nico Callewaert (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(6). p.2701-2721
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The TriForC database : a comprehensive up-to-date resource of plant triterpene biosynthesis

Karel Miettinen (UGent) , Sabrina Iñigo (UGent) , Lukasz Kreft (UGent) , Jacob Pollier (UGent) , Christof De Bo (UGent) , Alexander Botzki (UGent) , Frederik Coppens (UGent) , Soren Bak and Alain Goossens (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D586-D594
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PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics

Michiel Van Bel (UGent) , Tim Diels (UGent) , Emmelien Vancaester (UGent) , Lukasz Kreft (UGent) , Alexander Botzki (UGent) , Yves Van de Peer (UGent) , Frederik Coppens (UGent) and Klaas Vandepoele (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D1190-D1196
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ConTra v3 : a tool to identify transcription factor binding sites across species, update 2017

Lukasz Kreft, Arne Soete (UGent) , Paco Hulpiau (UGent) , Alexander Botzki, Yvan Saeys (UGent) and Pieter De Bleser (UGent)

(2017) NUCLEIC ACIDS RESEARCH. 45(W1). p.W490-W494
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miSTAR : miRNA target prediction through modeling quantitative and qualitative miRNA binding site information in a stacked model structure

Gert Van Peer (UGent) , Ayla De Paepe, Michiel Stock (UGent) , Jasper Anckaert (UGent) , Pieter-Jan Volders (UGent) , Jo Vandesompele (UGent) , Bernard De Baets (UGent) and Willem Waegeman (UGent)

(2017) NUCLEIC ACIDS RESEARCH. 45(7).

Academic Bibliography

An update on sORFs.org : a repository of small ORFs identified by ribosome profiling

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

JASPAR 2018 : update of the open-access database of transcription factor binding profiles and its web framework

TF2Network : predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information

The online Tabloid Proteome : an annotated database of protein associations

Capturing the ‘ome’ : the expanding molecular toolbox for RNA and DNA library construction

The TriForC database : a comprehensive up-to-date resource of plant triterpene biosynthesis

PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics

ConTra v3 : a tool to identify transcription factor binding sites across species, update 2017

miSTAR : miRNA target prediction through modeling quantitative and qualitative miRNA binding site information in a stacked model structure

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