Ghent University Academic Bibliography

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A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Indra Bervoets, Maarten Van Brempt (UGent) , Katleen Van Nerom, Bob Van Hove (UGent) , Jo Maertens (UGent) , Marjan De Mey (UGent) and Daniel Charlier

(2018) NUCLEIC ACIDS RESEARCH. 46(4). p.2133-2144
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An update on sORFs.org : a repository of small ORFs identified by ribosome profiling

Volodimir Olexiouk (UGent) , Wim Van Criekinge (UGent) and Gerben Menschaert (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D497-D502
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JASPAR 2018 : update of the open-access database of transcription factor binding profiles and its web framework

Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime A Castro-Mondragon, Robin van der Lee, Adrien Bessy, Jeanne Cheneby, Shubhada Rajabhau Kulkarni (UGent) , Ge Tan, et al.

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D260-D266
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TF2Network : predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information

Shubhada Rajabhau Kulkarni (UGent) , Dries Vaneechoutte (UGent) , Jan Van de Velde (UGent) and Klaas Vandepoele (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(6).
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Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

Jonas Defoort (UGent) , Yves Van de Peer (UGent) and Vanessa Vermeirssen (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(13). p.6480-6503
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Capturing the ‘ome’ : the expanding molecular toolbox for RNA and DNA library construction

Morgane Boone (UGent) , Andries De Koker (UGent) and Nico Callewaert (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(6). p.2701-2721
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The online Tabloid Proteome : an annotated database of protein associations

Surya Gupta (UGent) , Demet Turan (UGent) , Jan Tavernier (UGent) and Lennart Martens (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D581-D585
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PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics

Michiel Van Bel (UGent) , Tim Diels (UGent) , Emmelien Vancaester (UGent) , Lukasz Kreft (UGent) , Alexander Botzki (UGent) , Yves Van de Peer (UGent) , Frederik Coppens (UGent) and Klaas Vandepoele (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D1190-D1196
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The TriForC database : a comprehensive up-to-date resource of plant triterpene biosynthesis

Karel Miettinen (UGent) , Sabrina Iñigo (UGent) , Lukasz Kreft (UGent) , Jacob Pollier (UGent) , Christof De Bo (UGent) , Alexander Botzki (UGent) , Frederik Coppens (UGent) , Soren Bak and Alain Goossens (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(D1). p.D586-D594
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RNAcentral : a comprehensive database of non-coding RNA sequences

Anton I Petrov, Simon JE Kay, Ioanna Kalvari, Kevin L Howe, Kristian A Gray, Elspeth A Bruford, Paul J Kersey, Guy Cochrane, Robert D Finn, Alex Bateman, et al.

(2017) NUCLEIC ACIDS RESEARCH. 45(D1). p.D128-D134

Academic Bibliography

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

An update on sORFs.org : a repository of small ORFs identified by ribosome profiling

JASPAR 2018 : update of the open-access database of transcription factor binding profiles and its web framework

TF2Network : predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information

Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

Capturing the ‘ome’ : the expanding molecular toolbox for RNA and DNA library construction

The online Tabloid Proteome : an annotated database of protein associations

PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics

The TriForC database : a comprehensive up-to-date resource of plant triterpene biosynthesis

RNAcentral : a comprehensive database of non-coding RNA sequences

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