Ghent University Academic Bibliography

Miscellaneous

Practical lessons from microbiome citizen-science projects

Sarah Lebeer and Sofie Goormachtig (UGent)

(2026) NATURE MICROBIOLOGY. 11(6). p.1474-1476

Journal Article
A1
open access

Enteropathy produced in mice by intergenerational transmission of small intestinal microbiota from undernourished children

Kali M. Pruss, Clara Kao, Alexandra E. Byrne, Robert Y. Chen, Blanda Di Luccia, Laura Karvelyte, Reyan Coskun, Mackenzie Lemieux, Keshav Nepal, Daniel M. Webber, et al.

(2026) NATURE MICROBIOLOGY. 11(7). p.1967-1981

Add to list

Journal Article
A1
open access

Host factors dictate gut microbiome alterations in chronic kidney disease more strongly than kidney function

H. Krukowski, Sophie Valkenburg (UGent) , A. Vich Vila, L. F. Maciel, J. F. Vázquez-Castellanos, Tessa Gryp, Marie Joossens (UGent) , Wim Van Biesen (UGent) , Francis Verbeke (UGent) , M. Derrien, et al.

(2026) NATURE MICROBIOLOGY. 11(3). p.664-677

Add to list

Journal Article
A1
open access

Challenges and opportunities in mRNA vaccine development against bacteria

Ilke Aernout (UGent) , Rein Verbeke (UGent) , Fabien Henri Thery (UGent) , Patrick Willems (UGent) , Uri Elia, Stefaan De Smedt (UGent) , Rino Rappuoli, Dan Peer, Francis Impens (UGent) and Ine Lentacker (UGent)

(2025) NATURE MICROBIOLOGY. 10(8). p.1816-1828

Add to list

Journal Article
A1
open access

Brain exposure to SARS-CoV-2 virions perturbs synaptic homeostasis

Emma Partiot, Aurélie Hirschler, Sophie Colomb, Willy Lutz, Tine Claeys (UGent) , François Delalande, Maika S. Deffieu, Yonis Bare, Judith R. E. Roels, Barbara Gorda, et al.

(2024) NATURE MICROBIOLOGY. 9(5). p.1189-1206

Add to list

Journal Article
A1
open access

OPENPichia : licence-free Komagataella phaffii chassis strains and toolkit for protein expression

Katrien Claes (UGent) , Dries Van Herpe (UGent) , Robin Vanluchene, Charlotte Roels (UGent) , Berre Van Moer (UGent) , Elise Wyseure (UGent) , Kristof Vandewalle, Hannah Eeckhaut (UGent) , Semiramis Yilmaz (UGent) , Sandrine Vanmarcke (UGent) , et al.

(2024) NATURE MICROBIOLOGY. 9(3). p.864-876

Add to list

Escherichia coli Rho GTPase-activating toxin CNF1 mediates NLRP3 inflammasome activation via p21-activated kinases-1/2 during bacteraemia in mice

Oceane Dufies, Anne Doye, Johan Courjon, Cedric Torre, Gregory Michel, Celine Loubatier, Arnaud Jacquel, Paul Chaintreuil, Alissa Majoor, Rodolphe R. Guinamard, et al.

(2021) NATURE MICROBIOLOGY. 6(3). p.401-412

Add to list

Ancestral sequence reconstruction pinpoints adaptations that enable avian influenza virus transmission in pigs

Wen Su, Rhodri Harfoot, Yvonne C. F. Su, Jennifer DeBeauchamp, Udayan Joseph, Jayanthi Jayakumar, Jeri-Carol Crumpton, Trushar Jeevan, Adam Rubrum, John Franks, et al.

(2021) NATURE MICROBIOLOGY. 6(11). p.1455-U240

Add to list

Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

David A. Hughes, Rodrigo Bacigalupe, Jun Wang, Malte C. Ruehlemann, Raul Y. Tito, Gwen Falony, Marie Joossens (UGent) , Sara Vieira-Silva, Liesbet Henckaerts, Leen Rymenans, et al.

(2020) NATURE MICROBIOLOGY. 5(9). p.1079-1087

Add to list

Journal Article
A1
open access

Roadmap for naming uncultivated archaea and bacteria

Alison E. Murray, John Freudenstein, Simonetta Gribaldo, Roland Hatzenpichler, Philip Hugenholtz, Peter Kämpfer, Konstantinos T. Konstantinidis, Christopher E. Lane, R. Thane Papke, Donovan H. Parks, et al.

(2020) NATURE MICROBIOLOGY. 5(8). p.987-994

Academic Bibliography

Practical lessons from microbiome citizen-science projects

Enteropathy produced in mice by intergenerational transmission of small intestinal microbiota from undernourished children

Host factors dictate gut microbiome alterations in chronic kidney disease more strongly than kidney function

Challenges and opportunities in mRNA vaccine development against bacteria

Brain exposure to SARS-CoV-2 virions perturbs synaptic homeostasis

OPENPichia : licence-free Komagataella phaffii chassis strains and toolkit for protein expression

Escherichia coli Rho GTPase-activating toxin CNF1 mediates NLRP3 inflammasome activation via p21-activated kinases-1/2 during bacteraemia in mice

Ancestral sequence reconstruction pinpoints adaptations that enable avian influenza virus transmission in pigs

Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

Roadmap for naming uncultivated archaea and bacteria

Contents

Support

Contact