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Digital PCR-based gene expression analysis using a highly multiplexed assay with universal detection probes to study induced pluripotent stem cell differentiation into cranial neural crest cells
(2025) Gene expression analysis : methods and protocols. In Methods in molecular biology (MIMB) 2880. p.17-47 -
Proximity-dependent protein biotinylation : methods and protocols
Petra Van Damme (UGent) -
Cross-species proximity-dependent protein biotinylation : a standardized approach for mapping proxeomes
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BioID in bacteria : selection of a suitable biotin ligase for proxeome mapping
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Unraveling N-terminal proteoform interactomes via multiplexed recombineering in Salmonella
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Assays to study plant response to high temperature in Arabidopsis : evidence in glutathione biosynthesis mutants
(2025) Plant stress memory : methods and protocols. In Methods in molecular biology (MIMB) 2988. p.9-19 -
High-coverage immunopeptidomics using timsTOF mass spectrometers with thunder-DDA-PASEF boosted by MS2Rescore
(2025) Immunoproteomics : methods and protocols. In Methods in molecular biology (MIMB) 2980. p.115-155 -
- Book Chapter
- open access
Characterization of the protein interactome of membrane-bound transcription factors using TurboID-based proximity labeling in planta
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Bioinformatic workflows for metaproteomics
(2024) Metaproteomics : methods and protocols. In Methods in molecular biology (MIMB) 2820. p.187-213 -
Bioinformatics pipeline for processing single-cell data
(2024) Mass spectrometry based single cell proteomics. In Methods in molecular biology (MIMB) 2817. p.221-239