Ghent University Academic Bibliography

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Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor

Sylwia Magdalena Struk (UGent) , Carolien De Cuyper, Anse Jacobs (UGent) , Lukas Braem, Alan Walton (UGent) , Annick De Keyser (UGent) , Stephen Depuydt (UGent) , Lam Dai Vu (UGent) , Ive De Smet (UGent) , François-Didier Boyer, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.
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Spectral prediction features as a solution for the search space size problem in proteogenomics

Steven Verbruggen (UGent) , Siegfried Gessulat, Ralf Gabriels (UGent) , Anna Matsaroki (UGent) , Hendrik Van de Voorde (UGent) , Bernhard Kuster, Sven Degroeve (UGent) , Lennart Martens (UGent) , Wim Van Criekinge (UGent) , Mathias Wilhelm, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.
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Robust summarization and inference in proteome-wide label-free quantification

Adriaan Sticker (UGent) , Ludger Goeminne, Lennart Martens (UGent) and Lieven Clement (UGent)

(2020) MOLECULAR & CELLULAR PROTEOMICS. 19(7). p.1209-1219
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The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

Stephanie Smith, Shanshuo Zhu, Lisa Joos (UGent) , Ianto Roberts (UGent) , Natalia Nikonorova (UGent) , Lam Dai Vu (UGent) , Elisabeth Stes (UGent) , Hyunwoo Cho, Antoine Larrieu, Wei Xuan (UGent) , et al.

(2020) MOLECULAR & CELLULAR PROTEOMICS. 19(8). p.1248-1262
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N-glycosylation site analysis reveals sex-related differences in protein N-glycosylation in the rice brown planthopper (Nilaparvata lugens)

Freja Scheys, Els Van Damme (UGent) , Jarne Pauwels (UGent) , An Staes (UGent) , Kris Gevaert (UGent) and Guy Smagghe (UGent)

(2020) MOLECULAR & CELLULAR PROTEOMICS. 19(3). p.529-539
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metaQuantome : an integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes

Caleb W Easterly, Ray Sajulga, Subina Mehta, James Johnson, Praveen Kumar, Shane Hubler, Bart Mesuere (UGent) , Joel Rudney, Timothy J Griffin and Pratik D Jagtap

(2019) MOLECULAR & CELLULAR PROTEOMICS. 18(suppl. 1). p.S82-S91
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PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms

Steven Verbruggen (UGent) , Elvis Ndah (UGent) , Wim Van Criekinge (UGent) , Siegfried Gessulat, Bernhard Kuster, Mathias Wilhelm, Gerben Menschaert (UGent) and Petra Van Damme (UGent)

(2019) MOLECULAR & CELLULAR PROTEOMICS. 18(suppl. 1). p.S126-S140
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Spatiotemporal changes of the phagosomal proteome in dendritic cells in response to LPS stimulation

Anne-Marie Pauwels, Anetta Hartlova, Julien Peltier, Yasmine Driege (UGent) , Griet Baudelet (UGent) , Priscille Brodin, Matthias Trost, Rudi Beyaert (UGent) and Eik Hoffmann (UGent)

(2019) MOLECULAR & CELLULAR PROTEOMICS. 18(5). p.909-922
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Omics assisted N-terminal proteoform and protein expression profiling on methionine aminopeptidase 1 (MetAP1) deletion

Veronique Jonckheere (UGent) , Daria Fijalkowska (UGent) and Petra Van Damme (UGent)

(2018) MOLECULAR & CELLULAR PROTEOMICS. 17(4). p.694-708
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Rapid remodeling of the host epithelial cell proteome by the listeriolysin O pore-forming toxin

Julien Karim Malet, Francis Impens (UGent) , Filipe Carvalho, Mélanie Anne Hamon, Pascale Cossart and David Ribet

(2018) MOLECULAR & CELLULAR PROTEOMICS. 17(8). p.1627-1636

Academic Bibliography

Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor

Spectral prediction features as a solution for the search space size problem in proteogenomics

Robust summarization and inference in proteome-wide label-free quantification

The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

N-glycosylation site analysis reveals sex-related differences in protein N-glycosylation in the rice brown planthopper (Nilaparvata lugens)

metaQuantome : an integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes

PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms

Spatiotemporal changes of the phagosomal proteome in dendritic cells in response to LPS stimulation

Omics assisted N-terminal proteoform and protein expression profiling on methionine aminopeptidase 1 (MetAP1) deletion

Rapid remodeling of the host epithelial cell proteome by the listeriolysin O pore-forming toxin

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