Ghent University Academic Bibliography

Journal Article
A1
open access

Selective modulation of the human glucocorticoid receptor compromises GR chromatin occupancy and recruitment of p300/CBP and the Mediator complex

Laura Van Moortel (UGent) , Annick Verhee (UGent) , Jonathan Thommis (UGent) , René Houtman, Diana Melchers, Louis Delhaye (UGent) , Chloé Van Leene (UGent) , Madeleine Hellemans (UGent) , Kris Gevaert (UGent) , Sven Eyckerman (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(3).

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Journal Article
A1
open access

msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level

Nina Demeulemeester (UGent) , Marie Gébelin, Lucas Caldi Gomes, Paul Lingor, Christine Carapito, Lennart Martens (UGent) and Lieven Clement (UGent)

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(2).

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Immunopeptidomics mapping of Listeria monocytogenes T cell epitopes in mice

Adillah Gul (UGent) , Lecia L. Pewe, Patrick Willems (UGent) , Rupert Mayer (UGent) , Fabien Henri Thery (UGent) , Caroline Asselman (UGent) , Ilke Aernout (UGent) , Rein Verbeke (UGent) , Denzel Eggermont (UGent) , Laura Van Moortel (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS.

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Journal Article
A1
open access

MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Aurélie Hirschler, Christine Carapito, Sven Degroeve (UGent) , Lennart Martens (UGent) and Ralf Gabriels (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).

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Journal Article
A1
open access

Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

Annelies Bogaert (UGent) , Daria Fijalkowska (UGent) , An Staes (UGent) , Tessa Van de Steene (UGent) , Hans Demol (UGent) and Kris Gevaert (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).

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Journal Article
A1
open access

Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor

Sylwia Magdalena Struk (UGent) , Carolien De Cuyper, Anse Jacobs, Lukas Braem, Alan Walton (UGent) , Annick De Keyser (UGent) , Stephen Depuydt (UGent) , Lam Dai Vu (UGent) , Ive De Smet (UGent) , François-Didier Boyer, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.

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Journal Article
A1
open access

Spectral prediction features as a solution for the search space size problem in proteogenomics

Steven Verbruggen (UGent) , Siegfried Gessulat, Ralf Gabriels (UGent) , Anna Matsaroki (UGent) , Hendrik Van de Voorde (UGent) , Bernhard Kuster, Sven Degroeve (UGent) , Lennart Martens (UGent) , Wim Van Criekinge (UGent) , Mathias Wilhelm, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.

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Journal Article
A1
open access

Robust summarization and inference in proteome-wide label-free quantification

Adriaan Sticker, Ludger Goeminne, Lennart Martens (UGent) and Lieven Clement (UGent)

(2020) MOLECULAR & CELLULAR PROTEOMICS. 19(7). p.1209-1219

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Journal Article
A1
open access

The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

Stephanie Smith, Shanshuo Zhu, Lisa Joos (UGent) , Ianto Roberts (UGent) , Natalia Nikonorova (UGent) , Lam Dai Vu (UGent) , Elisabeth Stes (UGent) , Hyunwoo Cho, Antoine Larrieu, Wei Xuan (UGent) , et al.

(2020) MOLECULAR & CELLULAR PROTEOMICS. 19(8). p.1248-1262

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Journal Article
A1
open access

N-glycosylation site analysis reveals sex-related differences in protein N-glycosylation in the rice brown planthopper (Nilaparvata lugens)

Freja Scheys, Els Van Damme (UGent) , Jarne Pauwels (UGent) , An Staes (UGent) , Kris Gevaert (UGent) and Guy Smagghe (UGent)

(2020) MOLECULAR & CELLULAR PROTEOMICS. 19(3). p.529-539

Academic Bibliography

Selective modulation of the human glucocorticoid receptor compromises GR chromatin occupancy and recruitment of p300/CBP and the Mediator complex

msqrob2PTM : differential abundance and differential usage analysis of MS-based proteomics data at the post-translational modification and peptidoform level

Immunopeptidomics mapping of Listeria monocytogenes T cell epitopes in mice

MS2Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor

Spectral prediction features as a solution for the search space size problem in proteogenomics

Robust summarization and inference in proteome-wide label-free quantification

The CEP5 peptide promotes abiotic stress tolerance, as revealed by quantitative proteomics, and attenuates the AUX/IAA equilibrium in Arabidopsis

N-glycosylation site analysis reveals sex-related differences in protein N-glycosylation in the rice brown planthopper (Nilaparvata lugens)

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