Ghent University Academic Bibliography

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Genomic investigations in animal enteric disease-associated Clostridium perfringens

Jan Franzen, Thomas Roder, Martin Larralde, Ana Carpio Espinosa, Sonja Kittl, Simon Feyer, Isabelle Brodard, Sam Nooij, Quinten Raymond Ducarmon, Faezeh Farhoosh, et al.

(2025) MICROBIAL GENOMICS. 11(11).
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Bacteriophages in Pseudomonas aeruginosa evade the CRISPR-Cas I-F system by depletion of PAM sequences

Irene Ortega Sanz (UGent) , Alejandro Rubio and Antonio J. Pérez-Pulido

(2025) MICROBIAL GENOMICS. 11(6).
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Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Johannes Berbers (UGent) , Kevin Vanneste, Nancy H. C. J. Roosens, Kathleen Marchal (UGent) , Pieter-Jan Ceyssens and Sigrid C. J. De Keersmaecker

(2023) MICROBIAL GENOMICS. 9(1).
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One to host them all : genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus

Tamara Halter, Stephan Köstlbacher, Thomas Rattei, Frederik Hendrickx (UGent) , Alejandro Manzano-Marín and Matthias Horn

(2023) MICROBIAL GENOMICS. 9(2).
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Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics

Igor S. Pessi, Rafael V. Popin, Benoit Durieu, Yannick Lara, Bjorn Tytgat (UGent) , Valentina Savaglia (UGent) , Beatriz Roncero-Ramos, Jenni Hultman, Elie Verleyen (UGent) , Wim Vyverman (UGent) , et al.

(2023) MICROBIAL GENOMICS. 9(7).
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A panoramic view of the genomic landscape of the genus Streptomyces

Marios Nikolaidis, Andrew Hesketh, Nikoletta Frangou, Dimitris Mossialos, Yves Van de Peer (UGent) , Stephen G. Oliver and Grigorios D. Amoutzias

(2023) MICROBIAL GENOMICS. 9(6).
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A general approach to identify low-frequency variants within influenza samples collected during routine surveillance

Laura Van Poelvoorde, Thomas Delcourt, Marnik Vuylsteke (UGent) , Sigrid C. J. De Keersmaecker, Isabelle Thomas, Steven Van Gucht, Xavier Saelens (UGent) , Nancy Roosens and Kevin Vanneste

(2022) MICROBIAL GENOMICS. 8(9).
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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert Bogaerts, Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2021) MICROBIAL GENOMICS. 7(11).
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Globetrotting strangles : the unbridled national and international transmission of Streptococcus equi between horses

Catriona Mitchell, Karen F. Steward, Amelia R. L. Charbonneau, Saoirse Walsh, Hayley Wilson, John F. Timoney, Ulli Wernery, Marina Joseph, David Craig, Kees van Maanen, et al.

(2021) MICROBIAL GENOMICS. 7(3).
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Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence Buytaers, Assia Saltykova, Wesley Mattheus, Valeska Laisnez, Bavo Verhaegen, Nancy H. C. Roosens, Kevin Vanneste (UGent) , Naiima Hammami, Brigitte Pochet, Vera Cantaert, et al.

(2021) MICROBIAL GENOMICS. 7(4).

Academic Bibliography

Genomic investigations in animal enteric disease-associated Clostridium perfringens

Bacteriophages in Pseudomonas aeruginosa evade the CRISPR-Cas I-F system by depletion of PAM sequences

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

One to host them all : genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus

Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics

A panoramic view of the genomic landscape of the genus Streptomyces

A general approach to identify low-frequency variants within influenza samples collected during routine surveillance

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Globetrotting strangles : the unbridled national and international transmission of Streptococcus equi between horses

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

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