Ghent University Academic Bibliography

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Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Johannes Berbers (UGent) , Kevin Vanneste, Nancy H. C. J. Roosens, Kathleen Marchal (UGent) , Pieter-Jan Ceyssens and Sigrid C. J. De Keersmaecker

(2023) MICROBIAL GENOMICS. 9(1).
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One to host them all : genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus

Tamara Halter, Stephan Köstlbacher, Thomas Rattei, Frederik Hendrickx (UGent) , Alejandro Manzano-Marín and Matthias Horn

(2023) MICROBIAL GENOMICS. 9(2).
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A panoramic view of the genomic landscape of the genus Streptomyces

Marios Nikolaidis, Andrew Hesketh, Nikoletta Frangou, Dimitris Mossialos, Yves Van de Peer (UGent) , Stephen G. Oliver and Grigorios D. Amoutzias

(2023) MICROBIAL GENOMICS. 9(6).
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A general approach to identify low-frequency variants within influenza samples collected during routine surveillance

Laura Van Poelvoorde (UGent) , Thomas Delcourt, Marnik Vuylsteke (UGent) , Sigrid C. J. De Keersmaecker, Isabelle Thomas, Steven Van Gucht, Xavier Saelens (UGent) , Nancy Roosens and Kevin Vanneste

(2022) MICROBIAL GENOMICS. 8(9).
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Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

Laura Van Poelvoorde (UGent) , Bert Bogaerts (UGent) , Qiang Fu, Sigrid C. J. De Keersmaecker, Isabelle Thomas, Nina Van Goethem, Steven Van Gucht, Raf Winand, Xavier Saelens (UGent) , Nancy Roosens, et al.

(2021) MICROBIAL GENOMICS. 7(9).
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Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Wesley Mattheus, Valeska Laisnez, Bavo Verhaegen, Nancy H. C. Roosens, Kevin Vanneste (UGent) , Naiima Hammami, Brigitte Pochet, Vera Cantaert, et al.

(2021) MICROBIAL GENOMICS. 7(4).
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Globetrotting strangles : the unbridled national and international transmission of Streptococcus equi between horses

Catriona Mitchell, Karen F. Steward, Amelia R. L. Charbonneau, Saoirse Walsh, Hayley Wilson, John F. Timoney, Ulli Wernery, Marina Joseph, David Craig, Kees van Maanen, et al.

(2021) MICROBIAL GENOMICS. 7(3).
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Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert Bogaerts (UGent) , Stéphanie Nouws (UGent) , Bavo Verhaegen, Sarah Denayer, Julien Van Braekel, Raf Winand, Qiang Fu, Florence Crombé, Denis Piérard, Kathleen Marchal (UGent) , et al.

(2021) MICROBIAL GENOMICS. 7(3).
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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert Bogaerts (UGent) , Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2021) MICROBIAL GENOMICS. 7(11).

Academic Bibliography

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

One to host them all : genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus

A panoramic view of the genomic landscape of the genus Streptomyces

A general approach to identify low-frequency variants within influenza samples collected during routine surveillance

Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Globetrotting strangles : the unbridled national and international transmission of Streptococcus equi between horses

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

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