Ghent University Academic Bibliography

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180

Add to list

Personalized proteome : comparing proteogenomics and open variant search approaches for single amino acid variant detection

Renee Salz, Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Pieter-Jan Volders (UGent) and Peter A.C. ’t Hoen

(2021) JOURNAL OF PROTEOME RESEARCH. 20(6). p.3353-3364

Add to list

Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling

Patrick Willems (UGent) , Ursula Fels (UGent) , An Staes (UGent) , Kris Gevaert (UGent) and Petra Van Damme (UGent)

(2021) JOURNAL OF PROTEOME RESEARCH. 20(2). p.1165-1177

Add to list

Journal Article
A1
open access

Unipept Desktop : a faster, more powerful metaproteomics results analysis tool

Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2021) JOURNAL OF PROTEOME RESEARCH. 20(4). p.2005-2009

Add to list

Universal spectrum explorer : a standalone (web-)application for cross-resource spectrum comparison

Tobias Schmidt, Patroklos Samaras, Viktoria Dorfer, Christian Panse, Tobias Kockmann, Leon Bichmann, Bart Van Puyvelde (UGent) , Yasset Perez-Riverol, Eric W. Deutsch, Bernhard Kuster, et al.

(2021) JOURNAL OF PROTEOME RESEARCH. 20(6). p.3388-3394

Add to list

Journal Article
A1
open access

MegaGO : a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets

Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Wassim Gabriel, Michał Burdukiewicz, Alessio Soggiu, Lennart Martens (UGent) , Bernhard Y. Renard, Henning Schiebenhoefer and Bart Mesuere (UGent)

(2021) JOURNAL OF PROTEOME RESEARCH. 20(4). p.2083-2088

Add to list

Journal Article
A1
open access

Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban Ramasamy (UGent) , Demet Turan (UGent) , Natalia Tichshenko (UGent) , Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Wim Vranken and Lennart Martens (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3478-3486

Add to list

Journal Article
A1
open access

COSS : a fast and user-friendly tool for spectral library searching

Genet Abay Shiferaw (UGent) , Elien Vandermarliere (UGent) , Niels Hulstaert (UGent) , Ralf Gabriels (UGent) , Lennart Martens (UGent) and Pieter-Jan Volders (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(7). p.2786-2793

Add to list

Journal Article
A1
open access

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Kay Schallert, Harald Barsnes, Peter Dawyndt (UGent) , Dirk Benndorf, Bernhard Y. Renard, Bart Mesuere (UGent) , Lennart Martens (UGent) and Thilo Muth

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3562-3566

Add to list

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Niels Hulstaert (UGent) , Jim Shofstahl, Timo Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens (UGent) and Yasset Perez-Riverol

(2020) JOURNAL OF PROTEOME RESEARCH. 19(1). p.537-542

Academic Bibliography

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Personalized proteome : comparing proteogenomics and open variant search approaches for single amino acid variant detection

Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling

Unipept Desktop : a faster, more powerful metaproteomics results analysis tool

Universal spectrum explorer : a standalone (web-)application for cross-resource spectrum comparison

MegaGO : a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets

Scop3P : a comprehensive resource of human phosphosites within their full context

COSS : a fast and user-friendly tool for spectral library searching

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Contents

Support

Contact