Ghent University Academic Bibliography

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Niels Hulstaert (UGent) , Jim Shofstahl, Timo Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens (UGent) and Yasset Perez-Riverol

(2020) JOURNAL OF PROTEOME RESEARCH. 19(1). p.537-542

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Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Kay Schallert, Harald Barsnes, Peter Dawyndt (UGent) , Dirk Benndorf, Bernhard Y. Renard, Bart Mesuere (UGent) , Lennart Martens (UGent) and Thilo Muth

(2020) JOURNAL OF PROTEOME RESEARCH.

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Journal Article
open access

Scop3P: A Comprehensive Resource of Human Phosphosites within Their Full Context

Pathmanaban Ramasamy (UGent) , Demet Turan (UGent) , Natalia Tichshenko (UGent) , Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Wim Vranken and Lennart Martens (UGent)

(2020) Journal of Proteome Research.

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Journal Article
open access

COSS: A Fast and User-Friendly Tool for Spectral Library Searching

Genet Abay Shiferaw (UGent) , Elien Vandermarliere, Niels Hulstaert (UGent) , Ralf Gabriels (UGent) , Lennart Martens (UGent) and Pieter-Jan Volders (UGent)

(2020) Journal of Proteome Research. p.2786-2793

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Proteomics Standards Initiative extended FASTA format

Pierre-Alain Binz, Jim Shofstahl, Juan Antonio Vizcaíno, Harald Barsnes, Robert J Chalkley, Gerben Menschaert (UGent) , Emanuele Alpi, Karl Clauser, Jimmy K Eng, Lydie Lane, et al.

(2019) JOURNAL OF PROTEOME RESEARCH. 18(6). p.2686-2692

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A well-controlled BioID design for endogenous bait proteins

Giel Vandemoortele (UGent) , Delphine De Sutter (UGent) , Aline Moliere (UGent) , Jarne Pauwels (UGent) , Kris Gevaert (UGent) and Sven Eyckerman (UGent)

(2019) JOURNAL OF PROTEOME RESEARCH. 18(1). p.95-106

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Unipept 4.0 : functional analysis of metaproteome data

Robbert Gurdeep Singh (UGent) , Alessandro Tanca, Antonio Palomba, Felix Van der Jeugt (UGent) , Pieter Verschaffelt (UGent) , Sergio Uzzau, Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2019) JOURNAL OF PROTEOME RESEARCH. 18(2). p.606-615

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hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

Laura De Clerck (UGent) , Sander Willems (UGent) , Roberta Noberini, Camilla Restellini, Bart Van Puyvelde (UGent) , Simon Daled (UGent) , Tiziana Bonaldi, Dieter Deforce (UGent) and Maarten Dhaenens (UGent)

(2019) JOURNAL OF PROTEOME RESEARCH. 18(11). p.3840-3849

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An update on the moFF algorithm for label-free quantitative proteomics

Andrea Argentini (UGent) , An Staes (UGent) , Björn Andreas Grüning, Subina Mehta, Caleb Easterly, Timothy Griffin, Pratik Jagtap, Francis Impens (UGent) and Lennart Martens (UGent)

(2019) JOURNAL OF PROTEOME RESEARCH. 18(2). p.728-731

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Expanding the use of spectral libraries in proteomics

Eric W Deutsch, Yasset Perez-Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, et al.

(2018) JOURNAL OF PROTEOME RESEARCH. 17(12). p.4051-4060

Academic Bibliography

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Scop3P: A Comprehensive Resource of Human Phosphosites within Their Full Context

COSS: A Fast and User-Friendly Tool for Spectral Library Searching

Proteomics Standards Initiative extended FASTA format

A well-controlled BioID design for endogenous bait proteins

Unipept 4.0 : functional analysis of metaproteome data

hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

An update on the moFF algorithm for label-free quantitative proteomics

Expanding the use of spectral libraries in proteomics

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