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Toward an integrated machine learning model of a proteomics experiment
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- Journal Article
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Machine learning on large-scale proteomics data identifies tissue and cell-type specific proteins
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ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics
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- Journal Article
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- open access
Proteomics standards initiative at twenty years : current activities and future work
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A comprehensive evaluation of consensus spectrum generation methods in proteomics
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psm_utils : a high-level python API for parsing and handling peptide-spectrum matches and proteomics search results
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- open access
Proteomics standards initiative’s ProForma 2.0 : unifying the encoding of proteoforms and peptidoforms
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- Journal Article
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Sensitive and specific spectral library searching with CompOmics Spectral library Searching tool and Percolator
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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files
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Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling