Ghent University Academic Bibliography

Mark

Expanding the use of spectral libraries in proteomics

Eric W Deutsch, Yasset Perez-Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, et al.

(2019) JOURNAL OF PROTEOME RESEARCH.

Mark

High-confidence interactome for RNF41 built on multiple orthogonal assays

Delphine Masschaele (UGent) , Joris Wauman (UGent) , Giel Vandemoortele (UGent) , Delphine De Sutter (UGent) , Leentje De Ceuninck (UGent) , Sven Eyckerman (UGent) and Jan Tavernier (UGent)

(2018) JOURNAL OF PROTEOME RESEARCH. 17(4). p.1348-1360

Mark

journalArticle
open access

An update on the moFF Algorithm for label-free quantitative proteomics

Andrea Argentini (UGent) , An Staes (UGent) , Björn Andreas Grüning, Subina Mehta, Caleb Easterly, Timothy Griffin, Pratik Jagtap, Francis Impens (UGent) and Lennart Martens

(2018) Journal of Proteome Research.

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Unipept 4.0 : functional analysis of metaproteome data

Robbert Gurdeep Singh (UGent) , Alessandro Tanca, Antonio Palomba, Felix Van der Jeugt (UGent) , Pieter Verschaffelt (UGent) , Sergio Uzzau, Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2018) JOURNAL OF PROTEOME RESEARCH.

Mark

Identification of immune-responsive gene 1 (IRG1) as a target of A20

Emmy Van Quickelberghe (UGent) , Arne Martens (UGent) , Ludger Goeminne (UGent) , Lieven Clement (UGent) , Geert van Loo (UGent) and Kris Gevaert (UGent)

(2018) JOURNAL OF PROTEOME RESEARCH. 17(6). p.2182-2191

Mark

Flagging false positives following untargeted LCMS characterization of histone PTM combinations

Sander Willems (UGent) , Maarten Dhaenens (UGent) , Elisabeth Govaert (UGent) , Laura De Clerck (UGent) , Paulien Meert (UGent) , Christophe Van Neste (UGent) , Filip Van Nieuwerburgh (UGent) and Dieter Deforce (UGent)

(2017) JOURNAL OF PROTEOME RESEARCH. 16(2). p.655-664

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journalArticle
A1
open access

Unbiased protein association study on the public human proteome reveals biological connections between co-occurring protein pairs

Surya Gupta (UGent) , Kenneth Verheggen (UGent) , Jan Tavernier (UGent) and Lennart Martens (UGent)

(2017) JOURNAL OF PROTEOME RESEARCH. 16(6). p.2204-2212

Mark

Brachyspira hyodysenteriae infection regulates mucin glycosylation synthesis inducing an increased expression of core-2 O-glycans in porcine colon

Vignesh Venkatakrishnan, Macarena P Quintana-Hayashi, Maxime Mahu, Freddy Haesebrouck (UGent) , Frank Pasmans (UGent) and Sara K Lindén

(2017) JOURNAL OF PROTEOME RESEARCH. 16(4). p.1728-1742

Mark

misc

Proteomics Standards Initiative : fifteen years of progress and future work

Eric W Deutsch, Sandra Orchard, Pierre-Alain Binz, Wout Bittremieux, Martin Eisenacher, Henning Hermjakob, Shin Kawano, Henry Lam, Gerhard Mayer, Gerben Menschaert (UGent) , et al.

(2017) JOURNAL OF PROTEOME RESEARCH. 16(12). p.4288-4298

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Expanding the interactome of TES by exploiting TES modules with different subcellular localizations

Stefano Sala (UGent) , Marleen Van Troys (UGent) , Sandrine Medves, Marie Catillon, Evy Timmerman (UGent) , An Staes (UGent) , Elisabeth Schaffner-Reckinger, Kris Gevaert (UGent) and Christophe Ampe (UGent)

(2017) JOURNAL OF PROTEOME RESEARCH. 16(5). p.2054-2071

Academic Bibliography

Expanding the use of spectral libraries in proteomics

High-confidence interactome for RNF41 built on multiple orthogonal assays

An update on the moFF Algorithm for label-free quantitative proteomics

Unipept 4.0 : functional analysis of metaproteome data

Identification of immune-responsive gene 1 (IRG1) as a target of A20

Flagging false positives following untargeted LCMS characterization of histone PTM combinations

Unbiased protein association study on the public human proteome reveals biological connections between co-occurring protein pairs

Brachyspira hyodysenteriae infection regulates mucin glycosylation synthesis inducing an increased expression of core-2 O-glycans in porcine colon

Proteomics Standards Initiative : fifteen years of progress and future work

Expanding the interactome of TES by exploiting TES modules with different subcellular localizations

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