Ghent University Academic Bibliography

Journal Article
A1
open access

Deciphering the largest disease-associated transcript isoforms in the human neural retina with advanced long-read sequencing approaches

Merel Stemerdink, Tabea Riepe, Nick Zomer, Renee Salz, Michael Kwint, Jaap Oostrik, Raoul Timmermans, Barbara Ferrari, Stefano Ferrari, Alfredo Dueñas Rey, et al.

(2025) GENOME RESEARCH. 35(4). p.725-739

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Journal Article
A1
open access

Genome-wide patterns of selection–drift variation strongly associate with organismal traits across the green plant lineage

Kavitha Uthanumallian, Andrea Del Cortona, Susana M. Coelho, Olivier De Clerck (UGent) , Sebastian Duchene and Heroen Verbruggen

(2024) GENOME RESEARCH. 34(8). p.1130-1139

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Journal Article
A1
open access

HDAC9 structural variants disrupting TWIST1 transcriptional regulation lead to craniofacial and limb malformations

Naama Hirsch, Idit Dahan, Eva D'haene (UGent) , Matan Avni, Sarah Vergult (UGent) , Marta Vidal-García, Pamela Magini, Claudio Graziano, Elena Bonora, Anna Maria Nardone, et al.

(2022) GENOME RESEARCH. 32(7). p.1242-1253

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Journal Article
A1
open access

High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue-specificity

Kaia Mattioli, Pieter-Jan Volders (UGent) , Chiara Gerhardinger, James C Lee, Philipp G Maass, Marta Melé and John L Rinn

(2019) GENOME RESEARCH. 29(3). p.344-355

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Journal Article
A1
open access

SQANTI : extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Manuel Tardaguila, Lorena de la Fuente, Cristina Marti, Cécile Pereira, Francisco Jose Pardo-Palacios, Hector del Risco, Marc Ferrell, Maravillas Mellado, Marissa Macchietto, Kenneth Verheggen (UGent) , et al.

(2018) GENOME RESEARCH. 28(3). p.396-411

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Journal Article
A1
open access

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini

Chan Hyun Na, Mustafa Barbhuiya, Min-Sik Kim, Steven Verbruggen (UGent) , Stephen Eacker, Olga Pletnikova, Juan Troncoso, Marc Halushka, Gerben Menschaert (UGent) , Christopher Overall, et al.

(2018) GENOME RESEARCH. 28(1). p.25-36

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The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions

Julie Dubois-Chevalier, Vanessa Dubois (UGent) , Helene Dehondt, Parisa Mazrooei, Claire Mazuy, Aurelien A. Serandour, Celine Gheeraert, Penderia Guillaume, Eric Bauge, Bruno Derudas, et al.

(2017) GENOME RESEARCH. 27(6). p.985-996

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Journal Article
A1
open access

Zygotes segregate entire parental genomes in distinct blastomere lineages causing cleavage-stage chimerism and mixoploidy

Aspasia Destouni, Masoud Zamani Esteki, Maaike Catteeuw (UGent) , Olga Tšuiko, Eftychia Dimitriadou, Katrien Smits (UGent) , Ants Kurg, Andres Salumets, Ann Van Soom (UGent) , Thierry Voet, et al.

(2016) GENOME RESEARCH. 26(5). p.567-578

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Journal Article
A1
open access

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

Kevin Vanneste (UGent) , Guy Baele (UGent) , Steven Maere (UGent) and Yves Van de Peer (UGent)

(2014) GENOME RESEARCH. 24(8). p.1334-1347

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Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach

Pablo Meyer, Geoffrey Siwo, Danny Zeevi, Eilon Sharon, Raquel Norel, Eran Segal, Gustavo Stolovitzky, the DREAM6 consortium, Yvan Saeys (UGent) and Kathleen Marchal (UGent)

(2013) GENOME RESEARCH. 23(11). p.1928-1937

Academic Bibliography

Deciphering the largest disease-associated transcript isoforms in the human neural retina with advanced long-read sequencing approaches

Genome-wide patterns of selection–drift variation strongly associate with organismal traits across the green plant lineage

HDAC9 structural variants disrupting TWIST1 transcriptional regulation lead to craniofacial and limb malformations

High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue-specificity

SQANTI : extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini

The logic of transcriptional regulator recruitment architecture at cis-regulatory modules controlling liver functions

Zygotes segregate entire parental genomes in distinct blastomere lineages causing cleavage-stage chimerism and mixoploidy

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach

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