Ghent University Academic Bibliography

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Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

Dehe Wang, Xiao Hu, Hanzhe Ye, Yue Wang, Qian Yang, Xiaodong Liang, Zilin Wang, Yifan Zhou, Miaomiao Wen, Xueyan Yuan, et al.

(2023) Genome Biology. 24(1).
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Systematic optimization of Cas12a base editors in wheat and maize using the ITER platform

Christophe Gaillochet (UGent) , Alexandra Pena Fernandez (UGent) , Vera Goossens (UGent) , Katelijn D’Halluin, Andrzej Drozdzecki (UGent) , Myriam Shafie, Julie Van Duyse (UGent) , Gert Van Isterdael (UGent) , Camila Gonzalez, Mattias Vermeersch (UGent) , et al.

(2023) GENOME BIOLOGY. 24(1).
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Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq

Viacheslav Mylka (UGent) , Irina Matetovici, Suresh Poovathingal, Jeroen Aerts, Niels Vandamme (UGent) , Ruth Seurinck (UGent) , Kevin Verstaen (UGent) , Gert Hulselmans, Silvie van den Hoecke, Isabelle Scheyltjens, et al.

(2022) GENOME BIOLOGY. 23(1).
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Parental genomes segregate into distinct blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts

Tine De Coster (UGent) , Heleen Masset, Olga Tsuiko, Maaike Catteeuw (UGent) , Yan Zhao, Nicolas Dierckxsens, Ainhoa Larreategui Aparicio, Eftychia Dimitriadou, Sophie Debrock, Karen Peeraer, et al.

(2022) GENOME BIOLOGY. 23(1).
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Response to correspondence on 'Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles : a multi-center evaluation'

Channabasavaiah B. Gurumurthy, Aidan R. O'Brien, Rolen M. Quadros, Jr. Adams, John, Pilar Alcaide, Shinya Ayabe, Johnathan Ballard, Surinder K. Batra, Marie-Claude Beauchamp, Kathleen A. Becker, et al.

(2021) GENOME BIOLOGY. 22(1).
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PCIP-seq : simultaneous sequencing of integrated viral genomes and their insertion sites with long reads

Maria Artesi, Vincent Hahaut, Basiel Cole (UGent) , Laurens Lambrechts (UGent) , Fereshteh Ashrafi, Ambroise Marçais, Olivier Hermine, Philip Griebel, Natasa Arsic, Frank van der Meer, et al.

(2021) GENOME BIOLOGY. 22(1).
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Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

Celestia Fang, Zhenjia Wang, Cuijuan Han, Stephanie L. Safgren, Kathryn A. Helmin, Emmalee R. Adelman, Valentina Serafin, Giuseppe Basso, Kyle P. Eagen, Alexandre Gaspar-Maia, et al.

(2020) GENOME BIOLOGY. 21(1).
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instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

Lyam Baudry, Nadège Guiglielmoni, Hervé Marie-Nelly, Alexandre Cormier, Martial Marbouty, Komlan Avia, Yann Loe Mie, Olivier Godfroy, Lieven Sterck (UGent) , J. Mark Cock, et al.

(2020) GENOME BIOLOGY. 21(1).
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DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumor immunotolerance

Flora D'Anna, Laurien Van Dyck, Jieyi Xiong, Hui Zhao, V Berrens, Rebecca, Junbin Qian, Pawel Bieniasz-Krzywiec, Vikas Chandra, Luc Schoonjans, Jason Matthews, et al.

(2020) GENOME BIOLOGY. 21(1).
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Essential guidelines for computational method benchmarking

Lukas M Weber, Wouter Saelens, Robrecht Cannoodt (UGent) , Charlotte Soneson, Alexander Hapfelmeier, Paul P Gardner, Anne-Laure Boulesteix, Yvan Saeys (UGent) and Mark D Robinson

(2019) GENOME BIOLOGY. 20.

Academic Bibliography

Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton

Systematic optimization of Cas12a base editors in wheat and maize using the ITER platform

Comparative analysis of antibody- and lipid-based multiplexing methods for single-cell RNA-seq

Parental genomes segregate into distinct blastomeres during multipolar zygotic divisions leading to mixoploid and chimeric blastocysts

Response to correspondence on 'Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles : a multi-center evaluation'

PCIP-seq : simultaneous sequencing of integrated viral genomes and their insertion sites with long reads

Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation

instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

DNA methylation repels binding of hypoxia-inducible transcription factors to maintain tumor immunotolerance

Essential guidelines for computational method benchmarking

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