Ghent University Academic Bibliography

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Essential guidelines for computational method benchmarking

Lukas M Weber, Wouter Saelens (UGent) , Robrecht Cannoodt (UGent) , Charlotte Soneson, Alexander Hapfelmeier, Paul P Gardner, Anne-Laure Boulesteix, Yvan Saeys (UGent) and Mark D Robinson

(2019) GENOME BIOLOGY. 20.
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Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles : a multi-center evaluation

Channabasavaiah B. Gurumurthy, Aidan R O'Brien, Rolen M Quadros, John Adams, Pilar Alcaide, Shinya Ayabe, Johnathan Ballard, Surinder K Batra, Marie-Claude Beauchamp, Kathleen A Becker, et al.

(2019) GENOME BIOLOGY. 20(1).
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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Koen Van den Berge (UGent) , Fanny Perraudeau, Charlotte Soneson, Michael I Love, Davide Risso, Jean-Philippe Vert, Mark D Robinson, Sandrine Dudoit and Lieven Clement (UGent)

(2018) GENOME BIOLOGY. 19.
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The proBAM and proBed standard formats : enabling a seamless integration of genomics and proteomics data

Gerben Menschaert (UGent) , Xiaojing Wang, Andrew R Jones, Fawaz Ghali, David Fenyö, Volodimir Olexiouk (UGent) , Bing Zhang, Eric W Deutsch, Tobias Ternent and Juan Antonio Vizcaíno

(2018) GENOME BIOLOGY. 19.
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Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data

Alemu Takele Assefa (UGent) , Katrijn De Paepe, Celine Everaert (UGent) , Pieter Mestdagh (UGent) , Olivier Thas (UGent) and Jo Vandesompele (UGent)

(2018) GENOME BIOLOGY. 19.
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stageR : a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

Koen Van den Berge (UGent) , Charlotte Soneson, Mark D Robinson and Lieven Clement (UGent)

(2017) GENOME BIOLOGY. 18.
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The genomes of two key bumblebee species with primitive eusocial organization

BM Sadd, SM Barribeau, G Bloch, Dirk de Graaf (UGent) , P Dearden, CG Elsik, J Gadau, CJP Grimmelikhuijzen, M Hasselmann, JD Lozier, et al.

(2015) GENOME BIOLOGY. 16.
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A depauperate immune repertoire precedes evolution of sociality in bees

Seth M Barribeau, Ben M Sadd, Louis du Plessis, Mark JF Brown, Severine D Buechel, Kaat Cappelle (UGent) , James C Carolan, Olivier Christiaens (UGent) , Thomas J Colgan, Silvio Erler, et al.

(2015) GENOME BIOLOGY. 16.
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Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population

Joke Baute (UGent) , Dorota Herman (UGent) , Frederik Coppens (UGent) , Jolien De Block (UGent) , Bram Slabbinck (UGent) , Matteo Dell'Acqua, Mario Enrico Pè, Steven Maere (UGent) , Hilde Nelissen (UGent) and Dirk Inzé (UGent)

(2015) GENOME BIOLOGY. 16.
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Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

Matteo Dell'Acqua, Daniel M Gatti, Giorgio Pea, Federica Cattonaro, Frederik Coppens (UGent) , Gabriele Magris, Aye L Hlaing, Htay H Aung, Hilde Nelissen (UGent) , Joke Baute (UGent) , et al.

(2015) GENOME BIOLOGY. 16.

Academic Bibliography

Essential guidelines for computational method benchmarking

Reproducibility of CRISPR-Cas9 methods for generation of conditional mouse alleles : a multi-center evaluation

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

The proBAM and proBed standard formats : enabling a seamless integration of genomics and proteomics data

Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data

stageR : a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

The genomes of two key bumblebee species with primitive eusocial organization

A depauperate immune repertoire precedes evolution of sociality in bees

Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

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