Ghent University Academic Bibliography

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Mark
- journalArticle
- A1
- open access
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Koen Van den Berge (UGent) , Fanny Perraudeau, Charlotte Soneson, Michael I Love, Davide Risso, Jean-Philippe Vert, Mark D Robinson, Sandrine Dudoit and Lieven Clement (UGent)

(2018) GENOME BIOLOGY. 19.
Mark
- journalArticle
- A1
- open access
The proBAM and proBed standard formats : enabling a seamless integration of genomics and proteomics data

Gerben Menschaert (UGent) , Xiaojing Wang, Andrew R Jones, Fawaz Ghali, David Fenyö, Volodimir Olexiouk (UGent) , Bing Zhang, Eric W Deutsch, Tobias Ternent and Juan Antonio Vizcaíno

(2018) GENOME BIOLOGY. 19.
Mark
- journalArticle
- A1
- open access
stageR : a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

Koen Van den Berge (UGent) , Charlotte Soneson, Mark D Robinson and Lieven Clement (UGent)

(2017) GENOME BIOLOGY. 18.
Mark
- journalArticle
- A1
- open access
The genomes of two key bumblebee species with primitive eusocial organization

BM Sadd, SM Barribeau, G Bloch, Dirk de Graaf (UGent) , P Dearden, CG Elsik, J Gadau, CJP Grimmelikhuijzen, M Hasselmann, JD Lozier, et al.

(2015) GENOME BIOLOGY. 16.
Mark
- journalArticle
- A1
- open access
Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

Matteo Dell'Acqua, Daniel M Gatti, Giorgio Pea, Federica Cattonaro, Frederik Coppens (UGent) , Gabriele Magris, Aye L Hlaing, Htay H Aung, Hilde Nelissen (UGent) , Joke Baute (UGent) , et al.

(2015) GENOME BIOLOGY. 16.
Mark
- journalArticle
- A1
- open access
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

Wenqian Zhang, Ying Yu, Falk Hertwig, Jean Thierry-Mieg, Wenwei Zhang, Danielle Thierry-Mieg, Jian Wang, Cesare Furlanello, Viswanath Devanarayan, Jie Cheng, et al.

(2015) GENOME BIOLOGY. 16.
Mark
- journalArticle
- A1
- open access
A depauperate immune repertoire precedes evolution of sociality in bees

Seth M Barribeau, Ben M Sadd, Louis du Plessis, Mark JF Brown, Severine D Buechel, Kaat Cappelle (UGent) , James C Carolan, Olivier Christiaens (UGent) , Thomas J Colgan, Silvio Erler, et al.

(2015) GENOME BIOLOGY. 16.
Mark
- journalArticle
- A1
- open access
Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population

Joke Baute (UGent) , Dorota Herman (UGent) , Frederik Coppens (UGent) , Jolien De Block (UGent) , Bram Slabbinck (UGent) , Matteo Dell'Acqua, Mario Enrico Pè, Steven Maere (UGent) , Hilde Nelissen (UGent) and Dirk Inzé (UGent)

(2015) GENOME BIOLOGY. 16.
Mark
- journalArticle
- A1
- open access
Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

Natasha M Glover, Josquin Daron, Lise Pingault, Klaas Vandepoele (UGent) , Etienne Paux, Catherine Feuillet and Frédéric Choulet

(2015) GENOME BIOLOGY. 16.
Mark
SVA retrotransposon insertion-associated deletion represents a novel mutational mechanism underlying large genomic copy number changes with non-recurrent breakpoints

Julia Vogt, Kathrin Bengesser, Kathleen Claes (UGent) , Katharina Wimmer, Victor-Felix Mautner, Rick van Minkelen, Eric Legius, Hilde Brems, Meena Upadhyaya, Josef Högel, et al.

(2014) GENOME BIOLOGY. 15(6).

Academic Bibliography

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

The proBAM and proBed standard formats : enabling a seamless integration of genomics and proteomics data

stageR : a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

The genomes of two key bumblebee species with primitive eusocial organization

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

A depauperate immune repertoire precedes evolution of sociality in bees

Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population

Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B

SVA retrotransposon insertion-associated deletion represents a novel mutational mechanism underlying large genomic copy number changes with non-recurrent breakpoints

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