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- 2013
- TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes
- Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice
- 2012
- Genome-wide promoter methylation analysis in neuroblastoma identifies prognostic methylation biomarkers.
- Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
- 2011
- Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control
- A mystery unveiled
- Stress response regulators identified through genome-wide transcriptome analysis of the (p) ppGpp-dependent response in Rhizobium etli
- 2010
- Characterizing regulatory path motifs in integrated networks using perturbational data
- Tracing the evolution of tissue identity with microRNAs
- Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling