Ghent University Academic Bibliography

Miscellaneous
open access

Life-history trade-offs explain local adaptation in Arabidopsis thaliana

Benjamin Brachi, Danièle L Filiault, Rahul Pisupati, Tal Dahan-Meir, Anna Igolkina, Alison Anastasio, Mathew S Box, Susan Duncan, Talia L Karasov, Envel Kerdaffrec, et al.

(2025) In eLife 14.

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Journal Article
A1
open access

Ym1 protein crystals promote type 2 immunity

Ines Heyndrickx (UGent) , Kim Deswarte (UGent) , Kenneth Verstraete (UGent) , Koen Verschueren (UGent) , Ursula Smole (UGent) , Helena Catharine Aegerter (UGent) , Ann Dansercoer (UGent) , Hamida Hammad (UGent) , Savvas Savvides (UGent) and Bart Lambrecht (UGent)

(2024) ELIFE. 12.

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Journal Article
A1
open access

Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics

Chananchida Sang-aram (UGent) , Robin Browaeys (UGent) , Ruth Seurinck (UGent) and Yvan Saeys (UGent)

(2024) ELIFE. 12.

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Journal Article
A2
open access

An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks

Gaetan De Waele (UGent) , Willem Waegeman (UGent) and Gerben Menschaert (UGent)

(2024) ELIFE. 13.

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Journal Article
A2
open access

TCR transgenic clone selection guided by immune receptor analysis and single-cell RNA expression of polyclonal responders

Nincy Debeuf (UGent) , Sahine Lameire (UGent) , Manon Vanheerswynghels (UGent) , Julie Deckers (UGent) , Caroline De Wolf (UGent) , Wendy Toussaint (UGent) , Rein Verbeke (UGent) , Kevin Verstaen (UGent) , Hamida Hammad (UGent) , Stijn Vanhee (UGent) , et al.

(2024) ELIFE. 13.

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Journal Article
A2
open access

Partial rejuvenation of the spermatogonial stem cell niche after gender-affirming hormone therapy in trans women

Emily Delgouffe, Samuel Madureira Silva, Frédéric Chalmel, Wilfried Cools, Camille Raets, Kelly Tilleman (UGent) , Guy T'Sjoen (UGent) , Yoni Baert and Ellen Goossens

(2024) ELIFE. 13.

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Journal Article
A2
open access

Crispant analysis in zebrafish as a tool for rapid functional screening of disease-causing genes for bone fragility

Sophie Debaenst (UGent) , Tamara Jarayseh (UGent) , Hanna De Saffel (UGent) , Jan Willem Bek (UGent) , Matthieu Boone (UGent) , Iván Josipovic (UGent) , Pierre Kibleur (UGent) , Ronald Y Kwon, Paul Coucke (UGent) and Andy Willaert (UGent)

(2024) ELIFE. 13.

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Journal Article
A2
open access

Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana

Nyasha M Charura, Ernesto Llamas, Concetta De Quattro, David Vilchez, Moritz Nowack (UGent) and Alga Zuccaro

(2024) ELIFE. 13.

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Journal Article
A1
open access

The antigenic landscape of human influenza N2 neuraminidases from 2009 until 2017

João Portela Catani (UGent) , Anouk Smet (UGent) , Tine Ysenbaert (UGent) , Marnik Vuylsteke (UGent) , Guy Bottu (UGent) , Janick Mathys (UGent) , Alexander Botzki (UGent) , Guadalupe Cortes-Garcia, Tod Strugnell, Raul Gomila, et al.

(2024) eLife. 12.

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Journal Article
A1
open access

Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes

Amelie A. Raz, Gabriela S. Vida, Sarah R. Stern, Sharvani Mahadevaraju, Jaclyn M. Fingerhut, Jennifer M. Viveiros, Soumitra Pal, Jasmine R. Grey, Mara R. Grace, Cameron W. Berry, et al.

(2023) ELIFE. 12.

Academic Bibliography

Life-history trade-offs explain local adaptation in Arabidopsis thaliana

Ym1 protein crystals promote type 2 immunity

Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics

An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks

TCR transgenic clone selection guided by immune receptor analysis and single-cell RNA expression of polyclonal responders

Partial rejuvenation of the spermatogonial stem cell niche after gender-affirming hormone therapy in trans women

Crispant analysis in zebrafish as a tool for rapid functional screening of disease-causing genes for bone fragility

Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana

The antigenic landscape of human influenza N2 neuraminidases from 2009 until 2017

Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes

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