Ghent University Academic Bibliography

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Whole exome sequencing as a screening tool in dogs : a pilot study

Fréderique Boeykens (UGent) , Evelien Bogaerts (UGent) , Liesbeth Vossaert (UGent) , Luc Peelman (UGent) , Filip Van Nieuwerburgh (UGent) , Jimmy Saunders (UGent) and Bart Broeckx (UGent)

(2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 27. p.960-968
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ToxDL 2.0 : protein toxicity prediction using a pretrained language model and graph neural networks

Lin Zhu, Yi Fang, Shuting Liu, Hong-Bin Shen, Wesley De Neve (UGent) and Xiaoyong Pan (UGent)

(2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 27. p.1538-1549
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Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations

William T. Scott, Siemen Rockx, Quinten Mariën (UGent) , Alberte Regueira López (UGent) , Pieter Candry, Ramon Ganigué (UGent) , Jasper J. Koehorst and Peter J. Schaap

(2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 27. p.649-660
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Protein flexibility drives sugar rotation and high substrate promiscuity in a GDP-sugar 4-epimerase

Carlos Alvarez Quispe (UGent) , Koen Beerens (UGent) , Andy-Mark W.H. Thunnissen, Xevi Biarnés, Antoni Planas and Tom Desmet (UGent)

(2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 27. p.2375-2385
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Angiogenesis goes computational : the future way forward to discover new angiogenic targets?

Abhishek Subramanian, Pooya Zakeri, Mira Mousa, Halima Alnaqbi, Fatima Yousif Alshamsi, Leo Bettoni, Ernesto Damiani, Habiba Alsafar, Yvan Saeys (UGent) and Peter Carmeliet

(2022) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 20. p.5235-5255
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Soil under stress : the importance of soil life and how it is influenced by (micro)plastic pollution

Lisa Joos (UGent) and Caroline De Tender (UGent)

(2022) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 20. p.1554-1566
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Maize specialized metabolome networks reveal organ-preferential mixed glycosides

Sandrien Desmet (UGent) , Yvan Saeys (UGent) , Kevin Verstaen (UGent) , Rebecca Dauwe (UGent) , Hoon Kim, Claudiu Niculaes (UGent) , Atsushi Fukushima, Geert Goeminne (UGent) , Ruben Vanholme (UGent) , John Ralph, et al.

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.1127-1144
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Seeing the forest for the trees : retrieving plant secondary biochemical pathways from metabolome networks

Sandrien Desmet (UGent) , Marlies Brouckaert (UGent) , Wout Boerjan (UGent) and Kris Morreel (UGent)

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.72-85
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Interactions between soil compositions and the wheat root microbiome under drought stress : from an in silico to in planta perspective

Jiyeon Si, Emilie froussart (UGent) , Tom Viaene, Jorge F. Vázquez-Castellanos, Kelly Hamonts, Lin Tang, Stien Beirinckx, Annick De Keyser (UGent) , Tibby Deckers, Fien Amery, et al.

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.4235-4247
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Bacterial species identification using MALDI-TOF mass spectrometry and machine learning techniques : a large-scale benchmarking study

Thomas Mortier (UGent) , Anneleen Wieme (UGent) , Peter Vandamme (UGent) and Willem Waegeman (UGent)

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.6157-6168

Academic Bibliography

Whole exome sequencing as a screening tool in dogs : a pilot study

ToxDL 2.0 : protein toxicity prediction using a pretrained language model and graph neural networks

Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations

Protein flexibility drives sugar rotation and high substrate promiscuity in a GDP-sugar 4-epimerase

Angiogenesis goes computational : the future way forward to discover new angiogenic targets?

Soil under stress : the importance of soil life and how it is influenced by (micro)plastic pollution

Maize specialized metabolome networks reveal organ-preferential mixed glycosides

Seeing the forest for the trees : retrieving plant secondary biochemical pathways from metabolome networks

Interactions between soil compositions and the wheat root microbiome under drought stress : from an in silico to in planta perspective

Bacterial species identification using MALDI-TOF mass spectrometry and machine learning techniques : a large-scale benchmarking study

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