Ghent University Academic Bibliography

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Uncertainty-aware single-cell annotation with a hierarchical reject option

Lauren Theunissen (UGent) , Thomas Mortier (UGent) , Yvan Saeys (UGent) and Willem Waegeman (UGent)

(2024) BIOINFORMATICS. 40(3).
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Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation

Utku Özbulak, Hyun Jung Lee, Jasper Zuallaert (UGent) , Wesley De Neve (UGent) , Stephen Depuydt (UGent) and Joris Vankerschaver (UGent)

(2023) BIOINFORMATICS. 39(6).
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syntenet : an R/Bioconductor package for the inference and analysis of synteny networks

Fabricio De Almeida Silva (UGent) , Tao Zhao, Kristian K Ullrich, M Eric Schranz and Yves Van de Peer (UGent)

(2023) BIOINFORMATICS. 39(1).
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Ionmob : a Python package for prediction of peptide collisional cross-section values

David Teschner, David Gomez-Zepeda, Arthur Declercq (UGent) , Mateusz K Łącki, Seymen Avci, Konstantin Bob, Ute Distler, Thomas Michna, Lennart Martens (UGent) , Stefan Tenzer, et al.

(2023) BIOINFORMATICS. 39(9).
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BioCCP.jl : collecting coupons in combinatorial biotechnology

Kirsten Van Huffel (UGent) , Michiel Stock (UGent) and Bernard De Baets (UGent)

(2022) BIOINFORMATICS. 38(4). p.1144-1145
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CpG transformer for imputation of single-cell methylomes

Gaetan De Waele (UGent) , Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2022) BIOINFORMATICS. 38(3). p.597-603
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OMEN : network-based driver gene identification using mutual exclusivity

Dries Van Daele, Bram Weytjens (UGent) , Luc De Raedt and Kathleen Marchal (UGent)

(2022) BIOINFORMATICS. 38(12). p.3245-3251
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ELIXIR biovalidator for semantic validation of life science metadata

Isuru Liyanage, Tony Burdett, Bert Droesbeke (UGent) , Karoly Erdos, Rolando Fernandez, Alasdair Gray, Muhammad Haseeb, Simon Jupp, Flavia Penim, Cyril Pommier, et al.

(2022) BIOINFORMATICS. 38(11). p.3141-3142
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Ksrates : positioning whole-genome duplications relative to speciation events in KS distributions

Cecilia Sensalari (UGent) , Steven Maere (UGent) and Rolf Lohaus (UGent)

(2022) BIOINFORMATICS. 38(2). p.530-532
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Unipept visualizations : an interactive visualization library for biological data

Pieter Verschaffelt (UGent) , James Collier (UGent) , Alexander Botzki (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) BIOINFORMATICS. 38(2). p.562-563

Academic Bibliography

Uncertainty-aware single-cell annotation with a hierarchical reject option

Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation

syntenet : an R/Bioconductor package for the inference and analysis of synteny networks

Ionmob : a Python package for prediction of peptide collisional cross-section values

BioCCP.jl : collecting coupons in combinatorial biotechnology

CpG transformer for imputation of single-cell methylomes

OMEN : network-based driver gene identification using mutual exclusivity

ELIXIR biovalidator for semantic validation of life science metadata

Ksrates : positioning whole-genome duplications relative to speciation events in KS distributions

Unipept visualizations : an interactive visualization library for biological data

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