Ghent University Academic Bibliography

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Benchmarking digital PCR partition classification methods with empirical and simulated duplex data

Yao Chen (UGent) , Ward De Spiegelaere (UGent) , Wim Trypsteen (UGent) , David Gleerup (UGent) , Jo Vandesompele (UGent) , Antoon Lievens (UGent) , Matthijs Vynck (UGent) and Olivier Thas (UGent)

(2024) BRIEFINGS IN BIOINFORMATICS. 25(3).
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Explainability in transformer models for functional genomics

Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2021) BRIEFINGS IN BIOINFORMATICS. 22(5).
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Closing the circle : current state and perspectives of circular RNA databases

Marieke Vromman (UGent) , Jo Vandesompele (UGent) and Pieter-Jan Volders (UGent)

(2021) BRIEFINGS IN BIOINFORMATICS. 22(1). p.288-297
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Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

Michiel Stock (UGent) , Tapio Pahikkala, Antti Airola, Willem Waegeman (UGent) and Bernard De Baets (UGent)

(2020) BRIEFINGS IN BIOINFORMATICS. 21(1). p.262-271
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A broken promise : microbiome differential abundance methods do not control the false discovery rate

Stijn Hawinkel (UGent) , Federico Mattiello (UGent) , Luc Bijnens and Olivier Thas (UGent)

(2019) BRIEFINGS IN BIOINFORMATICS. 20(1). p.210-221
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Travelling the world of gene-gene interactions

Kristel Van Steen (UGent)

(2012) BRIEFINGS IN BIOINFORMATICS. 13(1). p.1-19
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Biological knowledge management: the emerging role of the Semantic Web technologies

Erick Antezana, Martin Kuiper and Vladimir Mironov (UGent)

(2009) Briefings in Bioinformatics. 10(4). p.392-407

Academic Bibliography

Benchmarking digital PCR partition classification methods with empirical and simulated duplex data

Explainability in transformer models for functional genomics

Closing the circle : current state and perspectives of circular RNA databases

Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

A broken promise : microbiome differential abundance methods do not control the false discovery rate

Travelling the world of gene-gene interactions

Biological knowledge management: the emerging role of the Semantic Web technologies

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