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A comparison of embedding aggregation strategies in drug-target interaction prediction
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- Journal Article
- A1
- open access
VariantscanR : an R-package as a clinical tool for variant filtering of known phenotype-associated variants in domestic animals
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- Journal Article
- A1
- open access
CRISPR-Cas-Docker : web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins
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- Journal Article
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Pan-genome de Bruijn graph using the bidirectional FM-index
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- Journal Article
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DeltaMSI : artificial intelligence-based modeling of microsatellite instability scoring on next-generation sequencing data
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- Journal Article
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FragGeneScanRs : faster gene prediction for short reads
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- Journal Article
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SUBATOMIC : a SUbgraph BAsed mulTi-OMIcs clustering framework to analyze integrated multi-edge networks
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- Journal Article
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DECONbench : a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification
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- Journal Article
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Accurate determination of node and arc multiplicities in de bruijn graphs using conditional random fields
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- Journal Article
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High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing
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- Journal Article
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BLAMM : BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs
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- Journal Article
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- open access
SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups
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Conditional permutation importance revisited
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- Journal Article
- A1
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Illumina error correction near highly repetitive DNA regions improves de novo genome assembly
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- Journal Article
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Optimising orbit counting of arbitrary order by equation selection
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- Journal Article
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Core Hunter 3 : flexible core subset selection
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- Journal Article
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- open access
BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs
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- Journal Article
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High-throughput PCR assay design for targeted resequencing using primerXL
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- Journal Article
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Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs
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- Journal Article
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Zipper plot : visualizing transcriptional activity of genomic regions
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- Journal Article
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Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations
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- Journal Article
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Evaluation of the impact of Illumina error correction tools on de novo genome assembly
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- Journal Article
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Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks
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- Journal Article
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Netter: re-ranking gene network inference predictions using structural network properties
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- Journal Article
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QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles
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- Journal Article
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ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering
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- Journal Article
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htsint: a Python library for sequencing pipelines that combines data through gene set generation
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- Journal Article
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RDML-Ninja and RDMLdb for standardized exchange of qPCR data
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- Journal Article
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An heuristic filtering tool to identify phenotype-associated genetic variants applied to human intellectual disability and canine coat colors
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- Journal Article
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SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering
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- Journal Article
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A long fragment aligner called ALFALFA
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Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis
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- Journal Article
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- open access
Impact of variance components on reliability of absolute quantification using digital PCR
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- Journal Article
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- open access
A formal concept analysis approach to consensus clustering of multi-experiment expression data
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- Journal Article
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An efficient algorithm to perform multiple testing in epistasis screening
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- Journal Article
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Make the most of your samples : Bayes factor estimators for high-dimensional models of sequence evolution
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- Journal Article
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Gauging triple stores with actual biological data
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- Journal Article
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Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling)
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- Journal Article
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Semantically linking molecular entities in literature through entity relationships
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- Journal Article
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Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model
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- Journal Article
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- open access
Core Hunter II : fast core subset selection based on multiple genetic diversity measures using Mixed Replica search
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- Journal Article
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- open access
U-Compare bio-event meta-service : compatible BioNLP event extraction services
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- Journal Article
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Query-based biclustering of gene expression data using Probabilistic Relational Models
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- Journal Article
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compomics-utilities: an open-source Java library for computational proteomics
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- Journal Article
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OLS Dialog : an open-source front end to the Ontology Lookup Service
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- Journal Article
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Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline
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- Journal Article
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- open access
From learning taxonomies to phylogenetic learning: integration of 16S rRNA gene data into FAME-based bacterial classification
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- Journal Article
- A1
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Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
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- Conference Paper
- C3
- open access
Integrating automated literature searches and text mining in biomarker discovery
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- Miscellaneous
- open access
Highlights of the BioTM 2010 workshop on advances in bio text mining