Ghent University Academic Bibliography

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BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs

Mahdi Heydari (UGent) , Giles Miclotte (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2018) BMC BIOINFORMATICS. 19.
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Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Mahdi Heydari (UGent) , Giles Miclotte (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs

Duc-Hau Le Duc-Hau Le, Lieven Verbeke (UGent) , Le Hoang Son Le Hoang Son, Dinh-Toi Chu Dinh-Toi Chu and Van-Huy Pham Van-Huy Pham

(2017) BMC BIOINFORMATICS. 18.
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High-throughput PCR assay design for targeted resequencing using primerXL

Steve Lefever (UGent) , Filip Pattyn, Bram De Wilde (UGent) , Frauke Coppieters (UGent) , Sarah De Keulenaer (UGent) , JAN HELLEMANS (UGent) and Jo Vandesompele (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

Bart Broeckx (UGent) , Luc Peelman (UGent) , Jimmy Saunders (UGent) , Dieter Deforce (UGent) and Lieven Clement (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Zipper plot : visualizing transcriptional activity of genomic regions

Francisco Avila Cobos (UGent) , Jasper Anckaert (UGent) , Pieter-Jan Volders (UGent) , Celine Everaert (UGent) , Dries Rombaut (UGent) , Jo Vandesompele (UGent) , Katleen De Preter (UGent) and Pieter Mestdagh (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Sofie Van Landeghem (UGent) , Thomas Van Parys (UGent) , Marieke Dubois (UGent) , Dirk Inzé (UGent) and Yves Van de Peer (UGent)

(2016) BMC BIOINFORMATICS. 17.
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Netter: re-ranking gene network inference predictions using structural network properties

Joeri Ruyssinck (UGent) , Piet Demeester (UGent) , Tom Dhaene (UGent) and Yvan Saeys (UGent)

(2016) BMC BIOINFORMATICS. 17.
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A long fragment aligner called ALFALFA

Michaël Vyverman (UGent) , Bernard De Baets (UGent) , Veerle Fack (UGent) and Peter Dawyndt (UGent)

(2015) BMC BIOINFORMATICS. 16.
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RDML-Ninja and RDMLdb for standardized exchange of qPCR data

Jan M Ruijter, Steve Lefever (UGent) , Jasper Anckaert (UGent) , Jan Hellemans, Michael W Pfaffl, Vladimir Benes, Stephen A Bustin, Jo Vandesompele (UGent) and Andreas Untergasser

(2015) BMC BIOINFORMATICS. 16.

Academic Bibliography

BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs

Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs

High-throughput PCR assay design for targeted resequencing using primerXL

Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

Zipper plot : visualizing transcriptional activity of genomic regions

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Netter: re-ranking gene network inference predictions using structural network properties

A long fragment aligner called ALFALFA

RDML-Ninja and RDMLdb for standardized exchange of qPCR data

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