Ghent University Academic Bibliography

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BLAMM : BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

Jan Fostier (UGent)

(2020) BMC BIOINFORMATICS. 21.
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SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups

Celine Everaert (UGent) , Pieter-Jan Volders (UGent) , Annelien Morlion (UGent) , Olivier Thas (UGent) and Pieter Mestdagh (UGent)

(2020) BMC Bioinformatics. 21(1).
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Optimising orbit counting of arbitrary order by equation selection

Ine Melckenbeeck (UGent) , Pieter Audenaert (UGent) , Thomas Van Parys (UGent) , Yves Van de Peer (UGent) , Didier Colle (UGent) and Mario Pickavet (UGent)

(2019) BMC BIOINFORMATICS. 20.
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Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

Mahdi Heydari (UGent) , Giles Miclotte (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2019) BMC BIOINFORMATICS. 20.
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BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs

Mahdi Heydari (UGent) , Giles Miclotte (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2018) BMC BIOINFORMATICS. 19.
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Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Mahdi Heydari (UGent) , Giles Miclotte (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Zipper plot : visualizing transcriptional activity of genomic regions

Francisco Avila Cobos (UGent) , Jasper Anckaert (UGent) , Pieter-Jan Volders (UGent) , Celine Everaert (UGent) , Dries Rombaut (UGent) , Jo Vandesompele (UGent) , Katleen De Preter (UGent) and Pieter Mestdagh (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs

Duc-Hau Le Duc-Hau Le, Lieven Verbeke (UGent) , Le Hoang Son Le Hoang Son, Dinh-Toi Chu Dinh-Toi Chu and Van-Huy Pham Van-Huy Pham

(2017) BMC BIOINFORMATICS. 18.
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Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

Bart Broeckx (UGent) , Luc Peelman (UGent) , Jimmy Saunders (UGent) , Dieter Deforce (UGent) and Lieven Clement (UGent)

(2017) BMC BIOINFORMATICS. 18.
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High-throughput PCR assay design for targeted resequencing using primerXL

Steve Lefever (UGent) , Filip Pattyn (UGent) , Bram De Wilde (UGent) , Frauke Coppieters (UGent) , Sarah De Keulenaer (UGent) , JAN HELLEMANS (UGent) and Jo Vandesompele (UGent)

(2017) BMC BIOINFORMATICS. 18.

Academic Bibliography

BLAMM : BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups

Optimising orbit counting of arbitrary order by equation selection

Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs

Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Zipper plot : visualizing transcriptional activity of genomic regions

Random walks on mutual microRNA-target gene interaction network improve the prediction of disease-associated microRNAs

Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

High-throughput PCR assay design for targeted resequencing using primerXL

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