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- 2017
- Zipper plot : visualizing transcriptional activity of genomic regions
- 2016
- Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks
- Netter: re-ranking gene network inference predictions using structural network properties
- 2015
- A long fragment aligner called ALFALFA
- RDML-Ninja and RDMLdb for standardized exchange of qPCR data
- htsint: a Python library for sequencing pipelines that combines data through gene set generation
- QQ-SNV: single nucleotide variant detection at low frequency by comparing the quality quantiles
- SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering
- An heuristic filtering tool to identify phenotype-associated genetic variants applied to human intellectual disability and canine coat colors
- ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering