Ghent University Academic Bibliography

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Unipept visualizations : an interactive visualization library for biological data

Pieter Verschaffelt (UGent) , James Collier (UGent) , Alexander Botzki (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) BIOINFORMATICS. 38(2). p.562-563
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Ksrates : positioning whole-genome duplications relative to speciation events in KS distributions

Cecilia Sensalari (UGent) , Steven Maere (UGent) and Rolf Lohaus (UGent)

(2022) BIOINFORMATICS. 38(2). p.530-532
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- Journal Article
- A1
- open access
CpG transformer for imputation of single-cell methylomes

Gaetan De Waele (UGent) , Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2022) BIOINFORMATICS. 38(3). p.597-603
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BioCCP.jl : collecting coupons in combinatorial biotechnology

Kirsten Van Huffel (UGent) , Michiel Stock (UGent) and Bernard De Baets (UGent)

(2022) BIOINFORMATICS. 38(4). p.1144-1145
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- Journal Article
OMEN: network-based driver gene identification using mutual exclusivity

Dries Van Daele, Bram Weytjens (UGent) , Luc De Raedt and Kathleen Marchal (UGent)

(2022) BIOINFORMATICS. 2022. p.1-7
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- Journal Article
- A1
- open access
Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account

Michiel Van Bel (UGent) and Klaas Vandepoele (UGent)

(2021) BIOINFORMATICS. 36(22-23). p.5558-5560
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- Journal Article
- A1
- open access
A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive

Miguel Roncoroni (UGent) , Bert Droesbeke (UGent) , Ignacio Eguinoa (UGent) , Kim De Ruyck (UGent) , Flora D'Anna (UGent) , Dilmurat Yusuf, Björn Grüning, Rolf Backofen and Frederik Coppens (UGent)

(2021) BIOINFORMATICS. 37(21). p.3983-3985
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PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

Xue Qing, Meng Wang, Gerrit Karssen (UGent) , Patricia Bucki, Wim Bert (UGent) and Sigal Braun-Miyara

(2020) BIOINFORMATICS. 36(4). p.1052-1056
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- Journal Article
- A1
- open access
SPsimSeq : semi-parametric simulation of bulk and single-cell RNA-sequencing data

Alemu Takele Assefa, Jo Vandesompele (UGent) and Olivier Thas (UGent)

(2020) BIOINFORMATICS. 36(10). p.3276-3278
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- Journal Article
- A1
- open access
GABAC : an arithmetic coding solution for genomic data

Jan Voges, Tom Paridaens (UGent) , Fabian Muentefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier (UGent) , Joern Ostermann and Mikel Hernaez

(2020) BIOINFORMATICS. 36(7). p.2275-2277

Academic Bibliography

Unipept visualizations : an interactive visualization library for biological data

Ksrates : positioning whole-genome duplications relative to speciation events in KS distributions

CpG transformer for imputation of single-cell methylomes

BioCCP.jl : collecting coupons in combinatorial biotechnology

OMEN: network-based driver gene identification using mutual exclusivity

Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account

A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive

PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

SPsimSeq : semi-parametric simulation of bulk and single-cell RNA-sequencing data

GABAC : an arithmetic coding solution for genomic data

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