Ghent University Academic Bibliography

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AQUa : an adaptive framework for compression of sequencing quality scores with random access functionality

Tom Paridaens (UGent) , Glenn Van Wallendael (UGent) , Wesley De Neve (UGent) and Peter Lambert (UGent)

(2018) BIOINFORMATICS. 34(3). p.425-433
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Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations

Ine Melckenbeeck (UGent) , Pieter Audenaert (UGent) , Didier Colle (UGent) and Mario Pickavet (UGent)

(2018) BIOINFORMATICS. 34(8). p.1372-1380
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Gearing up to handle the mosaic nature of life in the quest for orthologs

Kristoffer Forslund, Cecile Pereira, Salvador Capella-Gutierrez, Alan Sousa da Silva, Adrian Altenhoff, Jaime Huerta-Cepas, Matthieu Muffato, Mateus Patricio, Klaas Vandepoele (UGent) , Ingo Ebersberger, et al.

(2018) BIOINFORMATICS. 34(2). p.323-329
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Computational deconvolution of transcriptomics data from mixed cell populations

Francisco Avila Cobos (UGent) , Jo Vandesompele (UGent) , Pieter Mestdagh (UGent) and Katleen De Preter (UGent)

(2018) BIOINFORMATICS.
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OMSim : a simulator for optical map data

Giles Miclotte (UGent) , Stéphane Plaisance (UGent) , Stephane Rombauts (UGent) , Yves Van de Peer (UGent) , Pieter Audenaert (UGent) and Jan Fostier (UGent)

(2017) BIOINFORMATICS. 33(17). p.2740-2742
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sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

Kevin Titeca (UGent) , Pieter Meysman, Kris Laukens, Lennart Martens (UGent) , Jan Tavernier (UGent) and Sven Eyckerman (UGent)

(2017) BIOINFORMATICS. 33(12). p.1902-1904
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MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

Surya Gupta (UGent) , Veronic De Puysseleyr (UGent) , José Van Der Heyden (UGent) , Davy Maddelein (UGent) , Irma Lemmens (UGent) , Sam Lievens (UGent) , Sven Degroeve (UGent) , Jan Tavernier (UGent) and Lennart Martens (UGent)

(2017) BIOINFORMATICS. 33(9). p.1424-1425
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PhyD3 : a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization

Lukasz Kreft (UGent) , Alexander Botzki (UGent) , Frederik Coppens (UGent) , Klaas Vandepoele (UGent) and Michiel Van Bel (UGent)

(2017) BIOINFORMATICS. 33(18). p.2946-2947
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AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality

Tom Paridaens (UGent) , Glenn Van Wallendael (UGent) , Wesley De Neve (UGent) and Peter Lambert (UGent)

(2017) BIOINFORMATICS. 33(10). p.1464-1472
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A Cytoscape app for motif enumeration with ISMAGS

Thomas Van Parys (UGent) , Ine Melckenbeeck (UGent) , Maarten Houbraken (UGent) , Pieter Audenaert (UGent) , Didier Colle (UGent) , Mario Pickavet (UGent) , Piet Demeester (UGent) and Yves Van de Peer (UGent)

(2017) BIOINFORMATICS. 33(3). p.461-463

Academic Bibliography

AQUa : an adaptive framework for compression of sequencing quality scores with random access functionality

Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations

Gearing up to handle the mosaic nature of life in the quest for orthologs

Computational deconvolution of transcriptomics data from mixed cell populations

OMSim : a simulator for optical map data

sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

PhyD3 : a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization

AFRESh : an adaptive framework for compression of reads and assembled sequences with random access functionality

A Cytoscape app for motif enumeration with ISMAGS

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