Ghent University Academic Bibliography

Mark

DoRes within CellMissy : dose-response analysis on cell migration and related data

Gwendolien Sergeant (UGent) , Lennart Martens (UGent) , Marleen Van Troys (UGent) and Paola Masuzzo (UGent)

(2019) BIOINFORMATICS.

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Curse : building expression atlases and co-expression networks from public RNA-Seq data

Dries Vaneechoutte (UGent) and Klaas Vandepoele (UGent)

(2019) BIOINFORMATICS.

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wgd : simple command line tools for the analysis of ancient whole genome duplications

Arthur Zwaenepoel (UGent) and Yves Van de Peer (UGent)

(2019) BIOINFORMATICS.

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AQUa : an adaptive framework for compression of sequencing quality scores with random access functionality

Tom Paridaens (UGent) , Glenn Van Wallendael (UGent) , Wesley De Neve (UGent) and Peter Lambert (UGent)

(2018) BIOINFORMATICS. 34(3). p.425-433

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SpliceRover : interpretable convolutional neural networks for improved splice site prediction

Jasper Zuallaert (UGent) , Fréderic Godin (UGent) , Mi Jung Kim (UGent) , Arne Soete (UGent) , Yvan Saeys (UGent) and Wesley De Neve (UGent)

(2018) BIOINFORMATICS. 34(24). p.4180-4188

Mark

journalArticle
A1
open access

Gearing up to handle the mosaic nature of life in the quest for orthologs

Kristoffer Forslund, Cecile Pereira, Salvador Capella-Gutierrez, Alan Sousa da Silva, Adrian Altenhoff, Jaime Huerta-Cepas, Matthieu Muffato, Mateus Patricio, Klaas Vandepoele (UGent) , Ingo Ebersberger, et al.

(2018) BIOINFORMATICS. 34(2). p.323-329

Mark

journalArticle
A1
open access

Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations

Ine Melckenbeeck (UGent) , Pieter Audenaert (UGent) , Didier Colle (UGent) and Mario Pickavet (UGent)

(2018) BIOINFORMATICS. 34(8). p.1372-1380

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sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

Kevin Titeca (UGent) , Pieter Meysman, Kris Laukens, Lennart Martens (UGent) , Jan Tavernier (UGent) and Sven Eyckerman (UGent)

(2017) BIOINFORMATICS. 33(12). p.1902-1904

Mark

journalArticle
A1
open access

MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

Surya Gupta (UGent) , Veronic De Puysseleyr, José Van Der Heyden (UGent) , Davy Maddelein (UGent) , Irma Lemmens (UGent) , Sam Lievens (UGent) , Sven Degroeve (UGent) , Jan Tavernier (UGent) and Lennart Martens (UGent)

(2017) BIOINFORMATICS. 33(9). p.1424-1425

Mark

journalArticle
A1
open access

OMSim : a simulator for optical map data

Giles Miclotte (UGent) , Stéphane Plaisance (UGent) , Stephane Rombauts (UGent) , Yves Van de Peer (UGent) , Pieter Audenaert (UGent) and Jan Fostier (UGent)

(2017) BIOINFORMATICS. 33(17). p.2740-2742

Academic Bibliography

DoRes within CellMissy : dose-response analysis on cell migration and related data

Curse : building expression atlases and co-expression networks from public RNA-Seq data

wgd : simple command line tools for the analysis of ancient whole genome duplications

AQUa : an adaptive framework for compression of sequencing quality scores with random access functionality

SpliceRover : interpretable convolutional neural networks for improved splice site prediction

Gearing up to handle the mosaic nature of life in the quest for orthologs

Efficiently counting all orbits of graphlets of any order in a graph using autogenerated equations

sfinx : an R package for the elimination of false positives from affinity purification-mass spectrometry datasets

MAPPI-DAT : data management and analysis for protein-protein interaction data from the high-throughput MAPPIT cell microarray platform

OMSim : a simulator for optical map data

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