Ghent University Academic Bibliography

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Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account

Michiel Van Bel (UGent) and Klaas Vandepoele (UGent)

(2021) BIOINFORMATICS.
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Unipept CLI 2.0 : adding support for visualizations and functional annotations

Pieter Verschaffelt (UGent) , Philippe Van Thienen, Tim Van Den Bossche (UGent) , Felix Van der Jeugt (UGent) , Caroline De Tender (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2020) BIOINFORMATICS. 36(14). p.4220-4221
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PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

Xue Qing, Meng Wang, Gerrit Karssen (UGent) , Patricia Bucki, Wim Bert (UGent) and Sigal Braun-Miyara

(2020) BIOINFORMATICS. 36(4). p.1052-1056
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GABAC : an arithmetic coding solution for genomic data

Jan Voges, Tom Paridaens (UGent) , Fabian Muentefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier (UGent) , Joern Ostermann and Mikel Hernaez

(2020) BIOINFORMATICS. 36(7). p.2275-2277
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PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

Gleb Goussarov (UGent) , Ilse Cleenwerck (UGent) , Mohamed Mysara, Natalie Leys, Pieter Monsieurs, Guillaume Tahon (UGent) , Aurélien Carlier (UGent) , Peter Vandamme (UGent) and Rob Van Houdt

(2020) BIOINFORMATICS. 36(8). p.2337-2344
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SPsimSeq : semi-parametric simulation of bulk and single-cell RNA-sequencing data

Alemu Takele Assefa (UGent) , Jo Vandesompele (UGent) and Olivier Thas (UGent)

(2020) BIOINFORMATICS. 36(10). p.3276-3278
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TinGa : fast and flexible trajectory inference with Growing Neural Gas

Helena Todorov (UGent) , Robrecht Cannoodt, Wouter Saelens (UGent) and Yvan Saeys (UGent)

(2020) BIOINFORMATICS. 36(Suppl 1). p.66-74
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ToxDL : deep learning using primary structure and domain embeddings for assessing protein toxicity

Xiaoyong Pan (UGent) , Jasper Zuallaert (UGent) , Xi Wang, Hong-Bin Shen, Elda Posada Campos, Denys O. Marushchak and Wesley De Neve (UGent)

(2020) BIOINFORMATICS. 36(21). p.5159-5168
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Curse : building expression atlases and co-expression networks from public RNA-Seq data

Dries Vaneechoutte and Klaas Vandepoele (UGent)

(2019) BIOINFORMATICS. 35(16). p.2880-2881
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DoRes within CellMissy : dose-response analysis on cell migration and related data

Gwendolien Sergeant (UGent) , Lennart Martens (UGent) , Marleen Van Troys (UGent) and Paola Masuzzo (UGent)

(2019) BIOINFORMATICS. 35(4). p.696-697

Academic Bibliography

Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account

Unipept CLI 2.0 : adding support for visualizations and functional annotations

PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

GABAC : an arithmetic coding solution for genomic data

PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

SPsimSeq : semi-parametric simulation of bulk and single-cell RNA-sequencing data

TinGa : fast and flexible trajectory inference with Growing Neural Gas

ToxDL : deep learning using primary structure and domain embeddings for assessing protein toxicity

Curse : building expression atlases and co-expression networks from public RNA-Seq data

DoRes within CellMissy : dose-response analysis on cell migration and related data

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