Ghent University Academic Bibliography

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Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions

Ana Sílvia Ferreira Diamantino Coelho e Silva (UGent) , Robbin Bouwmeester (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2020) BIOINFORMATICS.
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Unipept CLI 2.0 : adding support for visualisations and functional annotations

Pieter Verschaffelt (UGent) , Philippe Van Thienen, Tim Van Den Bossche (UGent) , Felix Van der Jeugt (UGent) , Caroline De Tender (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2020) BIOINFORMATICS.
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PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

Xue Qing, Meng Wang, Gerrit Karssen (UGent) , Patricia Bucki, Wim Bert (UGent) and Sigal Braun-Miyara

(2020) BIOINFORMATICS. 36(4). p.1052-1056
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- Journal Article
- A1
- open access
PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

Gleb Goussarov (UGent) , Ilse Cleenwerck (UGent) , Mohamed Mysara, Natalie Leys, Pieter Monsieurs, Guillaume Tahon (UGent) , Aurélien Carlier (UGent) , Peter Vandamme (UGent) and Rob Van Houdt

(2020) BIOINFORMATICS. 36(8). p.2337-2344
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- Journal Article
- open access
GABAC: an arithmetic coding solution for genomic data

Jan Voges, Tom Paridaens (UGent) , Fabian Muentefering, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa, Jan Fostier (UGent) , Joern Ostermann and Mikel Hernaez

(2020) BIOINFORMATICS. 36(7). p.2275-2277
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- Journal Article
- open access
SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data

Alemu Takele Assefa (UGent) , Jo Vandesompele (UGent) and Olivier Thas (UGent)

(2020) Bioinformatics.
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- open access
DoRes within CellMissy : dose-response analysis on cell migration and related data

Gwendolien Sergeant (UGent) , Lennart Martens (UGent) , Marleen Van Troys (UGent) and Paola Masuzzo (UGent)

(2019) BIOINFORMATICS. 35(4). p.696-697
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- Journal Article
- A1
- open access
wgd-simple command line tools for the analysis of ancient whole genome duplications

Arthur Zwaenepoel (UGent) and Yves Van de Peer (UGent)

(2019) BIOINFORMATICS. 35(12). p.2153-2155
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Curse : building expression atlases and co-expression networks from public RNA-Seq data

Dries Vaneechoutte (UGent) and Klaas Vandepoele (UGent)

(2019) BIOINFORMATICS. 35(16). p.2880-2881
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- Journal Article
- A1
- open access
BrAPI : an application programming interface for plant breeding applications

Peter Selby, Rafael Abbeloos (UGent) , Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E Benites-Alfaro, Clay Birkett, Viana C Calaminos, Pierre Carceller, Guillaume Cornut, et al.

(2019) BIOINFORMATICS. 35(20). p.4147-4155

Academic Bibliography

Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions

Unipept CLI 2.0 : adding support for visualisations and functional annotations

PPNID : a reference database and molecular identification pipeline for plant-parasitic nematodes

PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing

GABAC: an arithmetic coding solution for genomic data

SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data

DoRes within CellMissy : dose-response analysis on cell migration and related data

wgd-simple command line tools for the analysis of ancient whole genome duplications

Curse : building expression atlases and co-expression networks from public RNA-Seq data

BrAPI : an application programming interface for plant breeding applications

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