Ghent University Academic Bibliography

Your filters: cql: parent exact "BIOINFORMATICS"

Add to list
- Journal Article
- A1
- open access
How negative sampling shapes the performance of transcription factor binding site prediction models

Natan Tourne (UGent) , Gaetan De Waele (UGent) , Vanessa Vermeirssen (UGent) and Willem Waegeman (UGent)

(2026) BIOINFORMATICS. 42(2).
Add to list
- Journal Article
- A1
- open access
doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2025) BIOINFORMATICS. 41(2).
Add to list
- Journal Article
- A1
- open access
BioArchLinux : community-driven fresh reproducible software repository for life sciences

Guoyi Zhang, Pekka Ristola, Han Su, Bipin Kumar, Boyu Zhang, Yujin Hu, Michael G. Elliot, Viktor Drobot, Jie Zhu, Jens Staal (UGent) , et al.

(2025) BIOINFORMATICS. 41(3).
Add to list
- Journal Article
- A1
- open access
ELLIPSIS : robust quantification of splicing in scRNA-seq

Marie Van Hecke (UGent) , Niko Beerenwinkel, Thibault Lootens (UGent) , Jan Fostier (UGent) , Robrecht Raedt (UGent) and Kathleen Marchal (UGent)

(2025) BIOINFORMATICS. 41(2).
Add to list
- Journal Article
- A1
- open access
SPAED : harnessing AlphaFold output for accurate segmentation of phage endolysin domains

Alexandre Boulay (UGent) , Emma Cremelie (UGent) , Clovis Galiez, Yves Briers (UGent) , Elsa Rousseau and Roberto Vázquez (UGent)

(2025) BIOINFORMATICS. 41(10).
Add to list
- Journal Article
- A1
- open access
Columba : fast approximate pattern matching with optimized search schemes

Luca Renders (UGent) , Lore Depuydt (UGent) , Travis Gagie and Jan Fostier (UGent)

(2025) BIOINFORMATICS. 41(12).
Add to list
- Journal Article
- A1
- open access
wgd v2 : a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Hengchi Chen (UGent) , Arthur Zwaenepoel and Yves Van de Peer (UGent)

(2024) BIOINFORMATICS. 40(5).
Add to list
- Journal Article
- A1
- open access
Uncertainty-aware single-cell annotation with a hierarchical reject option

Lauren Theunissen (UGent) , Thomas Mortier (UGent) , Yvan Saeys (UGent) and Willem Waegeman (UGent)

(2024) BIOINFORMATICS. 40(3).
Add to list
- Journal Article
- A1
- open access
GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks

Uxia Veleiro, Jesus de la Fuente, Guillermo Serrano, Marija Pizurica (UGent) , Mikel Casals, Antonio Pineda-Lucena, Silve Vicent, Idoia Ochoa, Olivier Gevaert and Mikel Hernaez

(2024) BIOINFORMATICS. 40(1).
Add to list
- Journal Article
- A1
- open access
Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems (UGent) , Lara De Deyn, Lena Duchateau, Carolin Seyfferth (UGent) , Thomas Eekhout (UGent) , et al.

(2024) BIOINFORMATICS. 40(9).

Academic Bibliography

How negative sampling shapes the performance of transcription factor binding site prediction models

doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

BioArchLinux : community-driven fresh reproducible software repository for life sciences

ELLIPSIS : robust quantification of splicing in scRNA-seq

SPAED : harnessing AlphaFold output for accurate segmentation of phage endolysin domains

Columba : fast approximate pattern matching with optimized search schemes

wgd v2 : a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Uncertainty-aware single-cell annotation with a hierarchical reject option

GeNNius: an ultrafast drug-target interaction inference method based on graph neural networks

Scywalker : scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Contents

Support

Contact