Ghent University Academic Bibliography

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Polarity-guided uneven mitotic divisions control brassinosteroid activity in proliferating plant root cells

Nemanja Vukasinovic (UGent) , Che-Wei Hsu, Marco Marconi, Shaopeng Li, Christopher Zachary (UGent) , Rachel Shahan, Pablo Szekley, Ziv Aardening, Isabelle Vanhoutte (UGent) , Qian Ma (UGent) , et al.

(2025) CELL. 188(8). p.2063-2080
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Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics

Chananchida Sang-aram (UGent) , Robin Browaeys (UGent) , Ruth Seurinck (UGent) and Yvan Saeys (UGent)

(2024) ELIFE. 12.
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Blocking abundant RNA transcripts by high-affinity oligonucleotides during transcriptome library preparation

Celine Everaert (UGent) , Jasper Verwilt (UGent) , Kimberly Verniers (UGent) , Niels Vandamme (UGent) , Alvaro Marcos Rubio (UGent) , Jo Vandesompele (UGent) and Pieter Mestdagh (UGent)

(2023) BIOLOGICAL PROCEDURES ONLINE. 25(1).
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Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division

Kim Eunji (UGent) , Cheng Zhang, Boyu Guo (UGent) , Thomas Eekhout (UGent) , Anaxi Houbaert, Jos Wendrich (UGent) , Niels Vandamme (UGent) , Manish Tiwari (UGent) , Claire Simon--Vezo (UGent) , Isabelle Vanhoutte (UGent) , et al.

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(36).
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Single-cell transcriptome analyses reveal novel targets modulating cardiac neovascularization by resident endothelial cells following myocardial infarction

Ziwen Li, Emmanouil G Solomonidis, Marco Meloni, Richard S Taylor, Rodger Duffin, Ross Dobie, Marlene S Magalhaes, Beth E P Henderson, Pieter Louwe (UGent) , Gabriela D’Amico, et al.

(2019) EUROPEAN HEART JOURNAL. 40(30). p.2507-2520
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Myeloid cell heterogeneity in cancer: not a single cell alike

Mate Kiss, Sofie Van Gassen (UGent) , Kiavash Movahedi, Yvan Saeys (UGent) and Damya Laoui

(2018) CELLULAR IMMUNOLOGY. 330. p.188-201
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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Koen Van den Berge (UGent) , Fanny Perraudeau, Charlotte Soneson, Michael I Love, Davide Risso, Jean-Philippe Vert, Mark D Robinson, Sandrine Dudoit and Lieven Clement (UGent)

(2018) GENOME BIOLOGY. 19.

Academic Bibliography

Polarity-guided uneven mitotic divisions control brassinosteroid activity in proliferating plant root cells

Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics

Blocking abundant RNA transcripts by high-affinity oligonucleotides during transcriptome library preparation

Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division

Single-cell transcriptome analyses reveal novel targets modulating cardiac neovascularization by resident endothelial cells following myocardial infarction

Myeloid cell heterogeneity in cancer: not a single cell alike

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

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