Ghent University Academic Bibliography

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Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells

Robrecht Cannoodt (UGent) , Wouter Saelens, Louise Deconinck (UGent) and Yvan Saeys (UGent)

(2021) NATURE COMMUNICATIONS. 12(1).
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Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

Michiel Stock (UGent) , Tapio Pahikkala, Antti Airola, Willem Waegeman (UGent) and Bernard De Baets (UGent)

(2020) BRIEFINGS IN BIOINFORMATICS. 21(1). p.262-271
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Gene regulatory network inference : connecting plant biology and mathematical modeling

Lisa Van den Broeck, Max Gordon, Dirk Inzé (UGent) , Cranos Williams and Rosangela Sozzani

(2020) FRONTIERS IN GENETICS. 11.
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A comparison of single-cell trajectory inference methods

Wouter Saelens, Robrecht Cannoodt (UGent) , Helena Todorov (UGent) and Yvan Saeys (UGent)

(2019) NATURE BIOTECHNOLOGY. 37(5). p.547-554
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High-dimensional Bayesian network inference from systems genetics data using genetic node ordering

Lingfei Wang, P. Audenaert (UGent) and Tom Michoel (UGent)

(2019) FRONTIERS IN GENETICS. 10.
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Netter: re-ranking gene network inference predictions using structural network properties

Joeri Ruyssinck (UGent) , Piet Demeester (UGent) , Tom Dhaene (UGent) and Yvan Saeys (UGent)

(2016) BMC BIOINFORMATICS. 17.
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Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia

Ivan Ishchukov, Yan Wu, Sandra Van Puyvelde, Jos Vanderleyden and Kathleen Marchal (UGent)

(2014) BMC MICROBIOLOGY. 14.
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Omics derived networks in bacteria

Aminael Sánchez-Rodríguez, Lore Cloots and Kathleen Marchal (UGent)

(2013) CURRENT BIOINFORMATICS. 8(4). p.489-495
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- C3
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Network inference by integrating biclustering and feature selection

Robrecht Cannoodt (UGent) , Joeri Ruyssinck (UGent) , Katleen De Preter (UGent) , Tom Dhaene (UGent) and Yvan Saeys (UGent)

(2013) Proceedings of BBC2013. p.33-33
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Efficient regularized least-squares algorithms for conditional ranking on relational data

Tapio Pahikkala, Antti Airola, Michiel Stock (UGent) , Bernard De Baets (UGent) and Willem Waegeman (UGent)

(2013) MACHINE LEARNING. 93(2-3). p.321-356

Academic Bibliography

Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells

Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

Gene regulatory network inference : connecting plant biology and mathematical modeling

A comparison of single-cell trajectory inference methods

High-dimensional Bayesian network inference from systems genetics data using genetic node ordering

Netter: re-ranking gene network inference predictions using structural network properties

Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia

Omics derived networks in bacteria

Network inference by integrating biclustering and feature selection

Efficient regularized least-squares algorithms for conditional ranking on relational data

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