Ghent University Academic Bibliography

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Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Bram Bloemen (UGent) , Maud Delvoye, Stefan Hoffman, Kathleen Marchal (UGent) , Kevin Vanneste (UGent) , Marie-Alice Fraiture (UGent) , Nancy H. C. Roosens and Sigrid C. J. De Keersmaecker

(2026) MSYSTEMS. 11(2).
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Filtering for truth : high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN)

Alexander Van Uffelen (UGent) , Andrea Gobbo, Marie-Alice Fraiture, Andres Posadas Yabar (UGent) , Nancy H. C. Roosens, Kathleen Marchal (UGent) , Sigrid C. J. De Keersmaecker and Kevin Vanneste

(2026) BMC GENOMICS. 27(1).
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Environmental DNA metabarcoding captures plankton diversity in the southern North Sea

Ilias Semmouri (UGent) , Michiel De Cooman, Enora Geslain, Filip Volckaert, Colin Janssen (UGent) and Jana Asselman (UGent)

(2026) ICES JOURNAL OF MARINE SCIENCE. 83(5).
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ONT_data_analysis v1.0

Irene Ortega Sanz (UGent)

(2025)
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Harnessing ferroptosis for precision oncology : challenges and prospects

Roberto Fernandez-Acosta, Iuliana Vintea (UGent) , Ine Koeken, Behrouz Hassannia and Tom Vanden Berghe (UGent)

(2025) BMC BIOLOGY. 23(1).
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Detection of Bacillus production strains and contaminants in food enzyme products

Alexander Van Uffelen (UGent) , Andres Posadas Yabar (UGent) , Marie-Alice Fraiture (UGent) , Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2025) FOOD CHEMISTRY: MOLECULAR SCIENCES. 11.
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Earlier onset of phytoplankton bloom in the Southern Bight of the North Sea in response to climate variability

Zixia Liu (UGent) , Ilias Semmouri (UGent) , Yunmeng Li, Maarten De Rijcke, Emmanuel Van Acker, Colin Janssen (UGent) and Jana Asselman (UGent)

(2025) MARINE ENVIRONMENTAL RESEARCH. 212.
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Recombinase polymerase amplification of forensic short tandem repeat loci

Sonja Skevin (UGent) , Liesl De Keyzer (UGent) , Lynn De Waele, Olivier Tytgat, David Van Hoofstat (UGent) , Dieter Deforce (UGent) and Filip Van Nieuwerburgh (UGent)

(2025) SCIENTIFIC REPORTS. 15(1).
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Bacterial community profile of three Ethiopian hot springs based on 16S rRNA gene nanopore sequencing

Meseret Guta Iticha (UGent) , Bodine Van Eenooghe (UGent) , Ketema Bacha and Piet Cools (UGent)

(2025) SCIENTIFIC REPORTS. 15(1).
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Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing : a case study on fluoroquinolone resistance

Bram Bloemen (UGent) , Mathieu Gand, Moniek Ringenier (UGent) , Bert Bogaerts, Kevin Vanneste, Kathleen Marchal (UGent) , Nancy H. C. Roosens, Jeroen Dewulf (UGent) , Filip Boyen (UGent) and Sigrid C. J. De Keersmaecker

(2025) FRONTIERS IN MICROBIOLOGY. 16.

Academic Bibliography

Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Filtering for truth : high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN)

Environmental DNA metabarcoding captures plankton diversity in the southern North Sea

ONT_data_analysis v1.0

Harnessing ferroptosis for precision oncology : challenges and prospects

Detection of Bacillus production strains and contaminants in food enzyme products

Earlier onset of phytoplankton bloom in the Southern Bight of the North Sea in response to climate variability

Recombinase polymerase amplification of forensic short tandem repeat loci

Bacterial community profile of three Ethiopian hot springs based on 16S rRNA gene nanopore sequencing

Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing : a case study on fluoroquinolone resistance

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