Ghent University Academic Bibliography

Journal Article
A1
open access

Comparative whole metagenome analysis in lesional and non-lesional scalp areas of psoriasis capitis patients and healthy individuals

Britta De Pessemier (UGent) , Celia Diez Lopez (UGent) , Steff Taelman (UGent) , Merel Verdonck (UGent) , Yang Chen, Annelies Stockman, Jo Lambert (UGent) , Tom Van de Wiele (UGent) and Chris Callewaert (UGent)

(2025) JOURNAL OF INVESTIGATIVE DERMATOLOGY. 145(3). p.605-617

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Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Yari Van Laere (UGent) , Marie-Alice Fraiture, Andrea Gobbo, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) , Nancy H. C. Roosens and Kevin Vanneste

(2025) FRONTIERS IN MICROBIOLOGY. 16.

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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Florence Buytaers, Bavo Verhaegen (UGent) , Tom Van Nieuwenhuysen (UGent) , Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2024) FRONTIERS IN MICROBIOLOGY. 15.

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A1
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An in-depth investigation of the microbiota and its virulence factors associated with severe udder cleft dermatitis lesions

Anne-Sofie Vermeersch (UGent) , M. Ali, Yannick Gansemans (UGent) , Filip Van Nieuwerburgh (UGent) , Richard Ducatelle (UGent) , Peter Geldhof (UGent) , Dieter Deforce (UGent) , J. Callens and Geert Opsomer (UGent)

(2024) JOURNAL OF DAIRY SCIENCE. 107(5). p.3219-3234

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Journal Article
A1
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AG1® induces a favorable impact on gut microbial structure and functionality in the Simulator of Human Intestinal Microbial Ecosystem® model

Trevor O. Kirby, Philip A. Sapp, Jeremy R. Townsend, Marlies Govaert, Cindy Duysburgh, Massimo Marzorati (UGent) , Tess M. Marshall and Ralph Esposito

(2024) CURRENT ISSUES IN MOLECULAR BIOLOGY. 46(1). p.557-569

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A1
open access

Biobased short chain fatty acid production : exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches

Merve Atasoy, William T. Scott Jr, Alberte Regueira López (UGent) , Miguel Mauricio-Iglesias, Peter J. Schaap and Hauke Smidt

(2024) BIOTECHNOLOGY ADVANCES. 73.

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A1
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Metagenomic characterization of the equine endometrial microbiome during anestrus

B.A. Heil, Machteld van Heule (UGent) , S.K. Thompson, T.A. Kearns, K.F. Beckers, E.L. Oberhaus, G King, Peter Daels (UGent) , Pouya Dini and J.L. Sones

(2024) JOURNAL OF EQUINE VETERINARY SCIENCE. 140.

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A1
open access

High prevalence of a novel circovirus in the European hedgehog (Erinaceus europaeus), a common species in decline

Kevin Mulder (UGent) , Frank Pasmans (UGent) , Filip Van Nieuwerburgh (UGent) , Naomi Terriere (UGent) , Moira Kelly, Seline Bregman, Elin Verbrugghe (UGent) and An Martel (UGent)

(2024) TRANSBOUNDARY AND EMERGING DISEASES. 2024.

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The Amphibian Genomics Consortium : advancing genomic and genetic resources for amphibian research and conservation

Tiffany A. Kosch, Maria Torres-Sanchez, H. Christoph Liedtke, Kyle Summers, Maximina H. Yun, Andrew J. Crawford, Simon T. Maddock, Md. Sabbir Ahammed, Victor L. N. Araujo, Lorenzo V. Bertola, et al.

(2024) BMC GENOMICS. 25(1).

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The bifidogenic effect of 2’fucosyllactose is driven by age-specific bifidobacterium species, demonstrating age as an important factor for gut microbiome targeted precision medicine

Jenni Firrman, Stef Deyaert, Karley K. Mahalak, LinShu Liu, Aurélien Baudot, Marie Joossens (UGent) , Jonas Poppe, Simon J. S. Cameron and Pieter Van den Abbeele

(2024) NUTRIENTS. 17(1).

Academic Bibliography

Comparative whole metagenome analysis in lesional and non-lesional scalp areas of psoriasis capitis patients and healthy individuals

Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

An in-depth investigation of the microbiota and its virulence factors associated with severe udder cleft dermatitis lesions

AG1® induces a favorable impact on gut microbial structure and functionality in the Simulator of Human Intestinal Microbial Ecosystem® model

Biobased short chain fatty acid production : exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling approaches

Metagenomic characterization of the equine endometrial microbiome during anestrus

High prevalence of a novel circovirus in the European hedgehog (Erinaceus europaeus), a common species in decline

The Amphibian Genomics Consortium : advancing genomic and genetic resources for amphibian research and conservation

The bifidogenic effect of 2’fucosyllactose is driven by age-specific bifidobacterium species, demonstrating age as an important factor for gut microbiome targeted precision medicine

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