Ghent University Academic Bibliography

Journal Article
A1
open access

RNA viruses in the house dust mite Dermatophagoides pteronyssinus, detection in environmental samples and in commercial allergen extracts used for in vivo diagnosis

Jose Cristian Vidal-Quist, Carmen Vidal, Fernando Escolar, Bart Lambrecht (UGent) , Stephane Rombauts (UGent) and Pedro Hernandez-Crespo

(2021) ALLERGY.

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Journal Article
A1
open access

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Wesley Mattheus, Valeska Laisnez, Bavo Verhaegen, Nancy H. C. Roosens, Kevin Vanneste (UGent) , Naiima Hammami, Brigitte Pochet, Vera Cantaert, et al.

(2021) MICROBIAL GENOMICS. 7(4).

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Journal Article
A1
open access

High-throughput generation of product profiles for arabinoxylan-active enzymes from metagenomes

Maria João de Carvalho Maurício da Fonseca (UGent) , Zachary Armstrong, Stephen G. Withers and Yves Briers (UGent)

(2020) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 86(23).

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Journal Article
A1
open access

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) MICROORGANISMS. 8(8).

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Journal Article
A1
open access

Antimicrobial de-escalation in the ICU : from recommendations to level of evidence

Ines Lakbar, Jan De Waele (UGent) , Alexis Tabah, Sharon Einav, Ignacio Martin-Loeches and Marc Leone

(2020) ADVANCES IN THERAPY. 37(7). p.3083-3096

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Increased viral read counts and metagenomic full genome characterization of porcine astrovirus 4 andPosavirus1 in sows in a swine farm with unexplained neonatal piglet diarrhea

Steven Van Borm, Kevin Vanneste, Qiang Fu, Dominiek Maes (UGent) , Alexandra Schoos (UGent) , Eline Vallaey and Frank Vandenbussche

(2020) VIRUS GENES. 56(6). p.696-704

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Journal Article
A1
open access

Metagenomic approach with the NetoVIR enrichment protocol reveals virus diversity within Ethiopian honey bees (Apis mellifera simensis)

Haftom Gebremedhn, Ward Deboutte, Karel Schoonvaere (UGent) , Peter Demaeght (UGent) , Lina De Smet (UGent) , Bezabeh Amssalu, Jelle Matthijnssens and Dirk de Graaf (UGent)

(2020) VIRUSES-BASEL. 12(11).

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Journal Article
A1
open access

Farm dust resistomes and bacterial microbiomes in European poultry and pig farms

Roosmarijn E.C. Luiken, Liese Van Gompel, Alex Bossers, Patrick Munk, Philip Joosten (UGent) , Rasmus Borup Hansen, Berith E. Knudsen, Silvia García-Cobos, Jeroen Dewulf (UGent) , Frank M. Aarestrup, et al.

(2020) ENVIRONMENT INTERNATIONAL. 143.

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Conference Paper
C3
open access

High-throughput substrate specificity analysis of metagenomic-derived arabinoxylan-active enzymes

Maria João de Carvalho Maurício da Fonseca (UGent) , Zachary Armstrong, Stephen G Withers and Yves Briers (UGent)

(2019) Carbohydrate Bioengineering, 13th meeting, Abstracts.

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Journal Article
A1
open access

Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data

Charles Dumolin (UGent) , Maarten Aerts, Bart Verheyde (UGent) , Simon Schellaert, Tim Vandamme, Felix Van der Jeugt (UGent) , Evelien De Canck (UGent) , Margo Cnockaert (UGent) , Anneleen Wieme (UGent) , Ilse Cleenwerck (UGent) , et al.

(2019) MSYSTEMS. 4(5).

Academic Bibliography

RNA viruses in the house dust mite Dermatophagoides pteronyssinus, detection in environmental samples and in commercial allergen extracts used for in vivo diagnosis

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

High-throughput generation of product profiles for arabinoxylan-active enzymes from metagenomes

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Antimicrobial de-escalation in the ICU : from recommendations to level of evidence

Increased viral read counts and metagenomic full genome characterization of porcine astrovirus 4 andPosavirus1 in sows in a swine farm with unexplained neonatal piglet diarrhea

Metagenomic approach with the NetoVIR enrichment protocol reveals virus diversity within Ethiopian honey bees (Apis mellifera simensis)

Farm dust resistomes and bacterial microbiomes in European poultry and pig farms

High-throughput substrate specificity analysis of metagenomic-derived arabinoxylan-active enzymes

Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data

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