Ghent University Academic Bibliography

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Machine learning reveals novel compound for the improved production of chitooligosaccharides in Escherichia coli

Friederike Mey, Gaetan De Waele (UGent) , Wouter Demeester (UGent) , Chiara Guidi (UGent) , Dries Duchi (UGent) , Tomek Diederen, Hanne Kochuyt, Kirsten Van Huffel, Nicola Zamboni, Willem Waegeman (UGent) , et al.

(2025) NEW BIOTECHNOLOGY. 86. p.39-46
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'Metabolic burden' explained : stress symptoms and its related responses induced by (over)expression of (heterologous) proteins in Escherichia coli

Sofie Snoeck (UGent) , Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2024) MICROBIAL CELL FACTORIES. 23(1).
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Metabolic engineering and process intensification for muconic acid production using Saccharomyces cerevisiae

Sinah Tönjes (UGent) , Evelien Uitterhaegen, Ilse Palmans, Birthe Ibach, Karel De Winter, Patrick Van Dijck, Wim Soetaert (UGent) and Paul Vandecruys

(2024) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 25(19).
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Cell type-specific control and post-translational regulation of specialized metabolism : opening new avenues for plant metabolic engineering

Nikolaos Ntelkis (UGent) , Alain Goossens (UGent) and Kresimir Sola (UGent)

(2024) CURRENT OPINION IN PLANT BIOLOGY. 81.
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Genome-scale model of Rothia mucilaginosa predicts gene essentialities and reveals metabolic capabilities

Nantia Leonidou, Lisa Ostyn (UGent) , Tom Coenye (UGent) , Aurélie Crabbé (UGent) and Andreas Dräger

(2024) MICROBIOLOGY SPECTRUM. 12(6).
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Taming CRISPRi : dynamic range tuning through guide RNA diversion

Bob Van Hove, Lien De Wannemaeker (UGent) , Isolde Missiaen, Jo Maertens (UGent) and Marjan De Mey (UGent)

(2023) NEW BIOTECHNOLOGY. 77. p.50-57
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Upcycling of plastic waste by an engineered microorganism into a novel chemical building block

Stijn Bovijn (UGent) , Tom Delmulle (UGent) and Wim Soetaert (UGent)

(2023) RRB23, the 19th International Conference on Renewable Resources & Biorefineries, Abstracts.
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A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B1 content in plant tissue samples

Simon Strobbe (UGent) , Jana Verstraete, Teresa B. Fitzpatrick, Christophe Stove (UGent) and Dominique Van Der Straeten (UGent)

(2023) PLANT METHODS. 19(1).
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- Book Chapter
ProD : a tool for predictive design of tailored promoters in Escherichia coli

Friederike Mey, Jim Clauwaert (UGent) , Maarten Van Brempt, Michiel Stock (UGent) , Jo Maertens (UGent) , Willem Waegeman (UGent) and Marjan De Mey (UGent)

(2022) Prokaryotic gene regulation : methods and protocols. In Methods in Molecular Biology 2516. p.51-59
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Biosensor-driven, model-based optimization of the orthogonally expressed naringenin biosynthesis pathway

Maarten Van Brempt, Andries Peeters (UGent) , Dries Duchi (UGent) , Lien De Wannemaeker (UGent) , Jo Maertens (UGent) , Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2022) MICROBIAL CELL FACTORIES. 21(1).

Academic Bibliography

Machine learning reveals novel compound for the improved production of chitooligosaccharides in Escherichia coli

'Metabolic burden' explained : stress symptoms and its related responses induced by (over)expression of (heterologous) proteins in Escherichia coli

Metabolic engineering and process intensification for muconic acid production using Saccharomyces cerevisiae

Cell type-specific control and post-translational regulation of specialized metabolism : opening new avenues for plant metabolic engineering

Genome-scale model of Rothia mucilaginosa predicts gene essentialities and reveals metabolic capabilities

Taming CRISPRi : dynamic range tuning through guide RNA diversion

Upcycling of plastic waste by an engineered microorganism into a novel chemical building block

A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B1 content in plant tissue samples

ProD : a tool for predictive design of tailored promoters in Escherichia coli

Biosensor-driven, model-based optimization of the orthogonally expressed naringenin biosynthesis pathway

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