Ghent University Academic Bibliography

Your filters: cql: keyword exact "gene regulatory networks"

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MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva Pérez (UGent) , Camilla Ferrari (UGent) , Julia Engelhorn, Thomas Depuydt, Hilde Nelissen (UGent) , Thomas Hartwig and Klaas Vandepoele (UGent)

(2024) PLANT JOURNAL. 117. p.280-301
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A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data

Jens Uwe Loers (UGent) and Vanessa Vermeirssen (UGent)

(2024) BRIEFINGS IN BIOINFORMATICS. 25(5).
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Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses

Xiaopeng Luo (UGent) , Xinqiang Jiang (UGent) , Vivian Schmitt, Shubhada Rajabhau Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem (UGent) , Olivier Van Aken (UGent) , Klaas Vandepoele (UGent) and Inge De Clercq (UGent)

(2024) JOURNAL OF EXPERIMENTAL BOTANY. 75(15). p.4655-4670
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The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil

Mehrshad Ebadi (UGent) , Quinten Bafort (UGent) , Eshchar Mizrachi, P. Audenaert (UGent) , Pieter Simoens (UGent) , Marc Van Montagu (UGent) , Dries Bonte (UGent) and Yves Van de Peer (UGent)

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(41).
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SUBATOMIC : a SUbgraph BAsed mulTi-OMIcs clustering framework to analyze integrated multi-edge networks

Jens Uwe Loers (UGent) and Vanessa Vermeirssen (UGent)

(2022) BMC BIOINFORMATICS. 23(1).
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Combinatorial transcriptional control of plant specialized metabolism

Maite Colinas Martinez (UGent) and Alain Goossens (UGent)

(2018) TRENDS IN PLANT SCIENCE. 23(4). p.324-336
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From network to phenotype : the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress

Lisa Van den Broeck (UGent) , Marieke Dubois (UGent) , Mattias Vermeersch (UGent) , Veronique Storme (UGent) , Minami Matsui and Dirk Inzé (UGent)

(2017) MOLECULAR SYSTEMS BIOLOGY. 13(12).
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Netter: re-ranking gene network inference predictions using structural network properties

Joeri Ruyssinck (UGent) , Piet Demeester (UGent) , Tom Dhaene (UGent) and Yvan Saeys (UGent)

(2016) BMC BIOINFORMATICS. 17.
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Modeling the evolution of molecular systems from a mechanistic perspective

Jayson Arley Gutiérrez Betancur (UGent) and Steven Maere (UGent)

(2014) TRENDS IN PLANT SCIENCE. 19(5). p.292-303
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ASP-G: an ASP-based method for finding attractors in genetic regulatory networks

Mushthofa Mushthofa (UGent) , Gustavo Adolfo Torres Torres (UGent) , Yves Van de Peer (UGent) , Kathleen Marchal (UGent) and Martine De Cock (UGent)

(2014) BIOINFORMATICS. 30(21). p.3086-3092

Academic Bibliography

MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data

Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses

The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil

SUBATOMIC : a SUbgraph BAsed mulTi-OMIcs clustering framework to analyze integrated multi-edge networks

Combinatorial transcriptional control of plant specialized metabolism

From network to phenotype : the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress

Netter: re-ranking gene network inference predictions using structural network properties

Modeling the evolution of molecular systems from a mechanistic perspective

ASP-G: an ASP-based method for finding attractors in genetic regulatory networks

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