Ghent University Academic Bibliography

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Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

Michiel Stock (UGent) , Tapio Pahikkala, Antti Airola, Willem Waegeman (UGent) and Bernard De Baets (UGent)

(2020) BRIEFINGS IN BIOINFORMATICS. 21(1). p.262-271
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- Journal Article
- A1
- open access
Network modeling unravels mechanisms of crosstalk between ethylene and salicylate signaling in potato

Ziva Ramsak, Anna Coll, Tjasa Stare, Oren Tzfadia (UGent) , Spela Baebler, Yves Van de Peer (UGent) and Kristina Gruden

(2018) PLANT PHYSIOLOGY. 178(1). p.488-499
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- Journal Article
- A1
- open access
Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

Jonas Defoort (UGent) , Yves Van de Peer (UGent) and Vanessa Vermeirssen (UGent)

(2018) NUCLEIC ACIDS RESEARCH. 46(13). p.6480-6503
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- Journal Article
- A1
- open access
Network-based identification of adaptive pathways in evolved ethanol-tolerant bacterial populations

Toon Swings, Bram Weytjens (UGent) , Thomas Schalck, Camille Bonte, Natalie Verstraeten, Jan Michiels and Kathleen Marchal (UGent)

(2017) MOLECULAR BIOLOGY AND EVOLUTION. 34(11). p.2927-2943
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- PhD Thesis
- open access
Exact and efficient algorithms for pairwise learning

Michiel Stock (UGent)

(2017)
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- Journal Article
- A1
- open access
Network-based analysis of eQTL data to prioritize driver mutations

Dries De Maeyer (UGent) , Bram Weytjens (UGent) , Luc De Raedt and Kathleen Marchal (UGent)

(2016) GENOME BIOLOGY AND EVOLUTION. 8(3). p.481-494
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- Journal Article
- A1
- open access
Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Sofie Van Landeghem (UGent) , Thomas Van Parys (UGent) , Marieke Dubois (UGent) , Dirk Inzé (UGent) and Yves Van de Peer (UGent)

(2016) BMC BIOINFORMATICS. 17.
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Identification of a complex genetic network underlying Saccharomyces cerevisiae colony morphology

Karin Voordeckers, Dries De Maeyer, Elisa van der Zande, Marcelo D Vinces, Wim Meert, Lore Cloots, Owen Ryan, Kathleen Marchal (UGent) and Kevin J Verstrepen

(2012) MOLECULAR MICROBIOLOGY. 86(1). p.225-239
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Unraveling tobacco BY-2 protein complexes with BN PAGE/LC-MS/MS and clustering methods

Noor Remmerie, Thomas De Vijlder, Dirk Valkenborg, Kris Laukens, Koen Smets, Jilles Vreeken, Inge Mertens, Sebastien C Carpentier, Bart Panis, Geert De Jaeger (UGent) , et al.

(2011) JOURNAL OF PROTEOMICS. 74(8). p.1201-1217
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- Journal Article
- A1
- open access
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL

Kris Laukens, Jens Hollunder (UGent) , Thanh Hai Dang, Geert De Jaeger (UGent) , Martin Kuiper, Erwin Witters, Alain Verschoren and Koenraad Van Leemput

(2010) BMC BIOINFORMATICS. 11.

Academic Bibliography

Algebraic shortcuts for leave-one-out cross-validation in supervised network inference

Network modeling unravels mechanisms of crosstalk between ethylene and salicylate signaling in potato

Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

Network-based identification of adaptive pathways in evolved ethanol-tolerant bacterial populations

Exact and efficient algorithms for pairwise learning

Network-based analysis of eQTL data to prioritize driver mutations

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Identification of a complex genetic network underlying Saccharomyces cerevisiae colony morphology

Unraveling tobacco BY-2 protein complexes with BN PAGE/LC-MS/MS and clustering methods

Flexible network reconstruction from relational databases with Cytoscape and CytoSQL

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