Ghent University Academic Bibliography

Journal Article
A2
open access

Computational insights into the circular permutation roles on ConA binding and structural stability

Vinicius Jose Da Silva Osterne (UGent) , Vanir Reis Pinto-Junior, Messias Vital Oliveira, Kyria Santiago Nascimento, Els Van Damme (UGent) and Benildo Sousa Cavada

(2024) CURRENT RESEARCH IN STRUCTURAL BIOLOGY. 7.

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Book Chapter

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den Bossche (UGent) , Pieter Verschaffelt (UGent) , Tibo Vande Moortele (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) and Bart Mesuere (UGent)

(2024) Protein bioinformatics. In Methods in Molecular Biology 2836. p.183-215

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Journal Article
A1
open access

Proceedings of the EuBIC-MS developers meeting 2023

Pedro Beltrao, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Tanja Holstein (UGent) , Tobias Kockmann, Alireza Nameni (UGent) , Christian Panse, Ralph Schlapbach, Ludwig Lautenbacher, Matthias Mattanovich, et al.

(2024) JOURNAL OF PROTEOMICS. 305.

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Journal Article
A1
open access

Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2023) MOLECULAR BIOLOGY AND EVOLUTION. 40(7).

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The Soybean Expression Atlas v2 : a comprehensive database of over 5000 RNA‐seq samples

Fabricio De Almeida Silva (UGent) , Francisnei Pedrosa‐Silva and Thiago M. Venancio

(2023) PLANT JOURNAL. 116(4). p.1041-1051

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Journal Article
A1
open access

ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics

Tobias G. Rehfeldt, Ralf Gabriels (UGent) , Robbin Bouwmeester (UGent) , Siegfried Gessulat, Benjamin A. Neely, Magnus Palmblad, Yasset Perez-Riverol, Tobias Schmidt, Juan Antonio Vizcaíno and Eric W. Deutsch

(2023) JOURNAL OF PROTEOME RESEARCH. 22(2). p.632-636

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Optimal brain dissection in dense autoencoders : towards determining feature importance in -omics data

Fin Amin, Lisa Van den Broeck (UGent) , Ive De Smet (UGent) , Anna M. Locke and Rossangela Sozzani

(2023) 2023 IEEE 5th International Conference on BioInspired Processing (BIP), Proceedings. p.1-8

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Journal Article
A1
open access

Methods in nutrition & gut microbiome research : an American society for nutrition satellite session [13 October 2022]

Riley L. Hughes, Cara L. Frankenfeld, Daryl M. Gohl, Curtis Huttenhower, Scott A. Jackson, Doris Vandeputte (UGent) , Emily Vogtmann, Sarah S. Comstock and Mary E. Kable

(2023) NUTRIENTS. 15(11).

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PhD Thesis
open access

Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods

Ralf Gabriels (UGent)

(2022)

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Conference Paper
C3
open access

BioArchLinux : bioinformatics community with Arch Linux

Guoyi Zhang, Yujin Hu, Viktor Drobot, Jens Staal (UGent) , Yun Yi and Michael Elliot

(2022) Bioinformatics Open Source Conference, Abstracts.

Academic Bibliography

Computational insights into the circular permutation roles on ConA binding and structural stability

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Proceedings of the EuBIC-MS developers meeting 2023

Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms

The Soybean Expression Atlas v2 : a comprehensive database of over 5000 RNA‐seq samples

ProteomicsML : an online platform for community-curated data sets and tutorials for machine learning in proteomics

Optimal brain dissection in dense autoencoders : towards determining feature importance in -omics data

Methods in nutrition & gut microbiome research : an American society for nutrition satellite session [13 October 2022]

Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods

BioArchLinux : bioinformatics community with Arch Linux

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