Ghent University Academic Bibliography

Journal Article
A1
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doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2025) BIOINFORMATICS. 41(2).

Journal Article
A1
open access

The Larix kaempferi genome reveals new insights into wood properties

Chao Sun, Yun‐hui Xie, Zhen Li (UGent) , Yan‐jing Liu, Xiao‐mei Sun, Jing‐jing Li, Wei‐peng Quan, Qing‐yin Zeng, Yves Van de Peer (UGent) and Shou‐gong Zhang

(2022) JOURNAL OF INTEGRATIVE PLANT BIOLOGY. 64(7). p.1364-1373

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A1
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A qualitative study among patients with an inherited retinal disease on the meaning of genomic unsolicited findings

Marlies Saelaert (UGent) , Heidi Mertes (UGent) , Tania Moerenhout, Caroline Van Cauwenbergh (UGent) , Bart Leroy (UGent) , Ignaas Devisch (UGent) and Elfride De Baere (UGent)

(2021) SCIENTIFIC REPORTS. 11(1).

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A1
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First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

Carine Yehouenou, Bert Bogaerts, Kevin Vanneste, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) , Dissou Affolabi, Reza Soleimani, Hector Rodriguez-Villalobos, Francoise Van Bambeke, et al.

(2021) ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS. 20(1).

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A1
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Criteria for reporting incidental findings in clinical exome sequencing : a focus group study on professional practices and perspectives in Belgian genetic centres

Marlies Saelaert (UGent) , Heidi Mertes (UGent) , Tania Moerenhout, Elfride De Baere (UGent) and Ignaas Devisch (UGent)

(2019) BMC MEDICAL GENOMICS. 12(1).

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A1
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Coordinated functional divergence of genes after genome duplication in Arabidopsis thaliana

Riet De Smet (UGent) , Ehsan Sabaghian, Zhen Li (UGent) , Yvan Saeys (UGent) and Yves Van de Peer (UGent)

(2017) PLANT CELL. 29(11). p.2786-2800

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A1
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Horsetails are ancient polyploids : evidence from Equisetum giganteum

Kevin Vanneste (UGent) , Lieven Sterck (UGent) , Alexander Andrew Myburg, Yves Van de Peer (UGent) and Eshchar Mizrachi

(2015) PLANT CELL. 27(6). p.1567-1578

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A1
open access

elPrep: high-performance preparation of sequence alignment/map files for variant calling

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) and Joke Reumers

(2015) PLOS ONE. 10(7).

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A1
open access

Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in Picea gene families

Amanda R De La Torre, Yao-Cheng Lin (UGent) , Yves Van de Peer (UGent) and Pär K Ingvarsson

(2015) GENOME BIOLOGY AND EVOLUTION. 7(4). p.1002-1015

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The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes

Heather Bracken-Grissom, Allen G Collins, Timothy Collins, Keith Crandall, Daniel Distel, Casey Dunn, Gonzalo Giribet, Steven Haddock, Nancy Knowlton, Mark Martindale, et al.

(2014) JOURNAL OF HEREDITY. 105(1). p.1-18

Academic Bibliography

doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

The Larix kaempferi genome reveals new insights into wood properties

A qualitative study among patients with an inherited retinal disease on the meaning of genomic unsolicited findings

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

Criteria for reporting incidental findings in clinical exome sequencing : a focus group study on professional practices and perspectives in Belgian genetic centres

Coordinated functional divergence of genes after genome duplication in Arabidopsis thaliana

Horsetails are ancient polyploids : evidence from Equisetum giganteum

elPrep: high-performance preparation of sequence alignment/map files for variant calling

Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in Picea gene families

The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes

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