Ghent University Academic Bibliography

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Ulva : an emerging green seaweed model for systems biology

Jonas Blomme (UGent) , Thomas Wichard, Thomas B. Jacobs (UGent) and Olivier De Clerck (UGent)

(2023) JOURNAL OF PHYCOLOGY. 59(3). p.433-440
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Alzheimer’s disease : a systems view provides a unifying explanation of its development

Corlia Grobler, Marvi van Tongeren (UGent) , Jan Gettemans (UGent) , Douglas B. Kell and Etheresia Pretorius

(2023) JOURNAL OF ALZHEIMERS DISEASE. 91(1). p.43-70
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Parameter estimation for models of chemical reaction networks from experimental data of reaction rates

Manvel Gasparyan (UGent) , Arnout Van Messem (UGent) and Shodhan Rao (UGent)

(2023) INTERNATIONAL JOURNAL OF CONTROL. 96(2). p.392-407
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Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2023) MOLECULAR BIOLOGY AND EVOLUTION. 40(7).
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Transcriptional and metabolic changes associated with internode development and reduced cinnamyl alcohol dehydrogenase activity in sorghum

Sávio Siqueira Ferreira, Geert Goeminne (UGent) , Marcella Siqueira Simões, André Vicioli de Almeida Pina, Leydson Gabriel Alves de Lima, Jade Pezard, Ana Gutiérrez, Jorge Rencoret, Jenny C Mortimer, José C del Río, et al.

(2022) JOURNAL OF EXPERIMENTAL BOTANY. 73(18). p.6307-6333
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A systems radiation biology approach to unravel the role of chronic low-dose-rate gamma-irradiation in inducing premature senescence in endothelial cells

Gabriele Babini, Giorgio Baiocco, Sofia Barbieri, Jacopo Morini, Traimate Sangsuwan, Siamak Haghdoost, Ramesh Yentrapalli, Omid Azimzadeh, Charlotte Rombouts (UGent) , An Aerts, et al.

(2022) PLOS ONE. 17(3).
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MINI-EX : integrative inference of single-cell gene regulatory networks in plants

Camilla Ferrari (UGent) , Nicolás Manosalva Pérez (UGent) and Klaas Vandepoele (UGent)

(2022) MOLECULAR PLANT. 15(11). p.1807-1824
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Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes

Razgar Seyed Rahmani (UGent) , Tao Shi, Dongzhi Zhang, Xiaoping Gou, Jing Yi, Giles Miclotte (UGent) , Kathleen Marchal (UGent) and Jia Li

(2021) BMC GENOMICS. 22(1).
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Mechanist idealisation in systems biology

Dingmar van Eck (UGent) and Cory Wright

(2021) SYNTHESE. 199(1-2). p.1555-1575
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Inference of plant gene regulatory networks using data-driven methods : a practical overview

Shubhada Rajabhau Kulkarni and Klaas Vandepoele (UGent)

(2020) BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. 1863(6).

Academic Bibliography

Ulva : an emerging green seaweed model for systems biology

Alzheimer’s disease : a systems view provides a unifying explanation of its development

Parameter estimation for models of chemical reaction networks from experimental data of reaction rates

Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms

Transcriptional and metabolic changes associated with internode development and reduced cinnamyl alcohol dehydrogenase activity in sorghum

A systems radiation biology approach to unravel the role of chronic low-dose-rate gamma-irradiation in inducing premature senescence in endothelial cells

MINI-EX : integrative inference of single-cell gene regulatory networks in plants

Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes

Mechanist idealisation in systems biology

Inference of plant gene regulatory networks using data-driven methods : a practical overview

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