Ghent University Academic Bibliography

Journal Article
A1
open access

A repository of the salivary metabolome and its key drivers in 1436 European children

Ellen De Paepe (UGent) , Emile Callemeyn (UGent) , Kimberly De Windt (UGent) , Kathleen Wijnant (UGent) , Vera Plekhova (UGent) , Beata Pomian (UGent) , Pablo Vangeenderhuysen (UGent) , Stefaan De Henauw (UGent) , Nathalie Michels (UGent) , Heli Viljakainen, et al.

(2025) EBIOMEDICINE. 122.

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Journal Article
A1
open access

Overall survival and exploratory biomarker analyses of abemaciclib plus trastuzumab with or without fulvestrant versus trastuzumab plus chemotherapy in HR+, HER2+ metastatic breast cancer patients

Sara M. Tolaney, Shom Goel, Jorge Nadal, Hannelore Denys (UGent) , Manuel R. Borrego, Lacey M. Litchfield, Jiangang Liu, Adams K. Appiah, Yanyun Chen and Fabrice André

(2024) CLINICAL CANCER RESEARCH. 30(1). p.39-49

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Journal Article
A1
open access

KLRG1 cell depletion as a novel therapeutic strategy in patients with mature T-cell lymphoma subtypes

Bimarzhan Assatova, Robert Willim, Christopher Trevisani, Garrett Haskett, Khyati Maulik Kariya, Kusha Chopra, Sung Rye Park, Michael Yevgeniy Tolstorukov, Sean M. McCabe, Jessica Duffy, et al.

(2024) CLINICAL CANCER RESEARCH. 30(11). p.2514-2530

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Journal Article
A1
open access

Incorporating topological priors into low-dimensional visualizations through topological regularization

Edith Heiter (UGent) , Robin Vandaele, Tijl De Bie (UGent) , Yvan Saeys (UGent) and Jefrey Lijffijt (UGent)

(2024) IEEE ACCESS. 12. p.129541-129573

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Journal Article
A1
open access

Characterizing the cell-free transcriptome in a humanized diffuse large B-cell lymphoma patient-derived tumor xenograft model for RNA-based liquid biopsy in a preclinical setting

Philippe Decruyenaere (UGent) , Willem Daneels (UGent) , Annelien Morlion (UGent) , Kimberly Verniers (UGent) , Jasper Anckaert (UGent) , Jan Tavernier (UGent) , Fritz Offner (UGent) and Jo Vandesompele (UGent)

(2024) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 25(18).

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Journal Article
A1
open access

Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements

Lovelace J. Luquette, Michael B. Miller, Zinan Zhou, Craig L. Bohrson, Yifan Zhao, Hu Jin, Doga Gulhan, Javier Ganz, Sara Bizzotto, Samantha Kirkham, et al.

(2022) NATURE GENETICS. 54(10). p.1564-1571

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Journal Article
A1
open access

Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

Kathleen Schoofs (UGent) , Annouck Philippron, Francisco Avila Cobos (UGent) , Jan Koster, Steve Lefever (UGent) , Jasper Anckaert (UGent) , Danny De Looze (UGent) , Jo Vandesompele (UGent) , Piet Pattyn (UGent) and Katleen De Preter (UGent)

(2022) SCIENTIFIC DATA. 9(1).

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Journal Article
A1
open access

Locally adapted gut microbiomes mediate host stress tolerance

Shira Houwenhuyse (UGent) , Robby Stoks, Shinjini Mukherjee and Ellen Decaestecker

(2021) ISME JOURNAL. 15(8). p.2401-2414

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Journal Article
A1
open access

Benchmarking of cell type deconvolution pipelines for transcriptomics data

Francisco Avila Cobos (UGent) , José Alquicira-Hernandez, Joseph E. Powell, Pieter Mestdagh (UGent) and Katleen De Preter (UGent)

(2020) NATURE COMMUNICATIONS. 11(1).

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Journal Article
A1
open access

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

Anneleen Remmerie, Liesbet Martens (UGent) , Tinne Thoné (UGent) , Angela Castoldi, Ruth Seurinck (UGent) , Benjamin Pavie (UGent) , Joris Roels (UGent) , Bavo Vanneste (UGent) , Sofie De Prijck (UGent) , Mathias Vanhockerhout (UGent) , et al.

(2020) IMMUNITY. 53(3). p.641-657.e1–e14

Academic Bibliography

A repository of the salivary metabolome and its key drivers in 1436 European children

Overall survival and exploratory biomarker analyses of abemaciclib plus trastuzumab with or without fulvestrant versus trastuzumab plus chemotherapy in HR+, HER2+ metastatic breast cancer patients

KLRG1 cell depletion as a novel therapeutic strategy in patients with mature T-cell lymphoma subtypes

Incorporating topological priors into low-dimensional visualizations through topological regularization

Characterizing the cell-free transcriptome in a humanized diffuse large B-cell lymphoma patient-derived tumor xenograft model for RNA-based liquid biopsy in a preclinical setting

Single-cell genome sequencing of human neurons identifies somatic point mutation and indel enrichment in regulatory elements

Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

Locally adapted gut microbiomes mediate host stress tolerance

Benchmarking of cell type deconvolution pipelines for transcriptomics data

Osteopontin expression identifies a subset of recruited macrophages distinct from Kupffer cells in the fatty liver

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