Ghent University Academic Bibliography

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Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-

Assia Saltykova (UGent) , Véronique Wuyts, Wesley Mattheus, Sophie Bertrand, Nancy HC Roosens, Kathleen Marchal (UGent) and Sigrid De Keersmaecker

(2018) PLOS ONE. 13(2).
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IBD risk loci are enriched in multigenic regulatory modules encompassing putative causative genes

Yukihide Momozawa, Julia Dmitrieva, Emilie Theatre, Valerie Deffontaine, Souad Rahmouni, Benoit Charloteaux, Francois Crins, Elisa Docampo, Mahmoud Elansary, Ann-Stephan Gori, et al.

(2018) NATURE COMMUNICATIONS. 9.
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TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets

Bieke Decaesteker (UGent) , Geertrui Denecker (UGent) , Christophe Van Neste (UGent) , Emmy M Dolman, Wouter Van Loocke (UGent) , Moritz Gartlgruber, Carolina de Carvalho Nunes (UGent) , Fanny De Vloed (UGent) , Pauline Depuydt (UGent) , Karen Verboom (UGent) , et al.

(2018) NATURE COMMUNICATIONS. 9.
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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Koen Van den Berge (UGent) , Fanny Perraudeau, Charlotte Soneson, Michael I Love, Davide Risso, Jean-Philippe Vert, Mark D Robinson, Sandrine Dudoit and Lieven Clement (UGent)

(2018) GENOME BIOLOGY. 19.
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Gene body methylation patterns in Daphnia are associated with gene family size

Jana Asselman (UGent) , Dieter De Coninck (UGent) , Michael E Pfrender and Karel De Schamphelaere (UGent)

(2016) GENOME BIOLOGY AND EVOLUTION. 8(4). p.1185-1196
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A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq

Sandra Steyaert (UGent) , Jolien Diddens, Jeroen Galle (UGent) , Ellen De Meester (UGent) , Sarah De Keulenaer (UGent) , Antje Bakker, Nina Sohnius-Wilhelmi, Carolina Frankl-Vilches, Annemie Van der Linden, Wim Van Criekinge (UGent) , et al.

(2016) SCIENTIFIC REPORTS. 6.
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DNA diagnostics of hereditary hearing loss : a targeted resequencing approach combined with a mutation classification system

Manou Sommen, Isabelle Schrauwen, Geert Vandeweyer, Nele Boeckx, Jason J Corneveaux, Jenneke van den Ende, An Boudewyns, Els De Leenheer (UGent) , Sandra Janssens (UGent) , Kathleen Claes (UGent) , et al.

(2016) HUMAN MUTATION. 37(8). p.812-819
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Transcript profiling for early stages during embryo development in Scots pine

Irene Merino, Malin Abrahamsson, Lieven Sterck (UGent) , Blanca Craven-Bartle, Francisco Canovas and Sara von Arnold

(2016) BMC PLANT BIOLOGY. 16.
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Meta-omics in inflammatory bowel disease research : applications, challenges, and guidelines

Mireia Valles-Colomer, Youssef Darzi, Sara Vieira-Silva, Gwen Falony, Jeroen Raes and Marie Joossens (UGent)

(2016) JOURNAL OF CROHNS & COLITIS. 10(6). p.735-746
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Genome-wide mapping of structural variations reveals a copy number variant that determines reproductive morphology in cucumber

Zhonghua Zhang, Linyong Mao, Huiming Chen, Fengjiao Bu, Guangcun Li, Jinjing Sun, Shuai Li, Honghe Sun, Chen Jiao, Rachel Blakely, et al.

(2015) PLANT CELL. 27(6). p.1595-1604

Academic Bibliography

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-

IBD risk loci are enriched in multigenic regulatory modules encompassing putative causative genes

TBX2 is a neuroblastoma core regulatory circuitry component enhancing MYCN/FOXM1 reactivation of DREAM targets

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Gene body methylation patterns in Daphnia are associated with gene family size

A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq

DNA diagnostics of hereditary hearing loss : a targeted resequencing approach combined with a mutation classification system

Transcript profiling for early stages during embryo development in Scots pine

Meta-omics in inflammatory bowel disease research : applications, challenges, and guidelines

Genome-wide mapping of structural variations reveals a copy number variant that determines reproductive morphology in cucumber

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