Ghent University Academic Bibliography

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- PhD Thesis
Identification and characterization of eukaryotic small open reading frames and microproteins

Marlies Peeters (UGent)

(2022)
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- Journal Article
- A1
- open access
To new beginnings : riboproteogenomics discovery of N-terminal proteoforms in Arabidopsis thaliana

Patrick Willems (UGent) , Elvis Ndah (UGent) , Veronique Jonckheere (UGent) , Frank Van Breusegem (UGent) and Petra Van Damme (UGent)

(2022) FRONTIERS IN PLANT SCIENCE. 12.
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- PhD Thesis
The proteogenomic hunt for new proteoforms using ribosome profiling

Steven Verbruggen (UGent)

(2020)
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A methodology for discovering novel brain-relevant peptides : combination of ribosome profiling and peptidomics

Ravi Tharakan, Simion Kreimer, Ceereena Ubaida-Mohien, Joelle Lavoie, Volodimir Olexiouk (UGent) , Gerben Menschaert (UGent) , Nicholas T. Ingolia, Robert N. Cole, Koko Ishizuka, Akira Sawa, et al.

(2020) NEUROSCIENCE RESEARCH. 151. p.31-37
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- Journal Article
- A1
- open access
mQC : a post-mapping data exploration tool for ribosome profiling

Steven Verbruggen (UGent) and Gerben Menschaert (UGent)

(2018) COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE. 181.
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Comprehensive peptide analysis of mouse brain striatum identifies novel sORF-encoded polypeptides

Harshavardhan Budamgunta, Volodimir Olexiouk (UGent) , Walter Luyten, Karin Schildermans, Evelyne Maes, Kurt Boonen, Gerben Menschaert (UGent) and Geert Baggerman

(2018) PROTEOMICS. 18(10).
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Using the sORFs.org database

Volodimir Olexiouk (UGent) and Gerben Menschaert (UGent)

(2018) CURRENT PROTOCOLS IN BIOINFORMATICS. 65(1).
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Proteogenomics from a bioinformatics angle : a growing field

Gerben Menschaert (UGent) and David Fenyö

(2017) MASS SPECTROMETRY REVIEWS. 36(5). p.584-599
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- Journal Article
- A1
- open access
Ribosome signatures aid bacterial translation initiation site identification

Adam Giess, Veronique Jonckheere (UGent) , Elvis Ndah (UGent) , Katarzyna Chyżyńska, Petra Van Damme (UGent) and Eivind Valen

(2017) BMC BIOLOGY. 15.
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- Book Chapter
Identification of small novel coding sequences, a proteogenomic endeavor

Volodimir Olexiouk (UGent) and Gerben Menschaert (UGent)

(2016) Proteogenomics. In Advances in Experimental Medicine and Biology 926. p.49-64

Academic Bibliography

Identification and characterization of eukaryotic small open reading frames and microproteins

To new beginnings : riboproteogenomics discovery of N-terminal proteoforms in Arabidopsis thaliana

The proteogenomic hunt for new proteoforms using ribosome profiling

A methodology for discovering novel brain-relevant peptides : combination of ribosome profiling and peptidomics

mQC : a post-mapping data exploration tool for ribosome profiling

Comprehensive peptide analysis of mouse brain striatum identifies novel sORF-encoded polypeptides

Using the sORFs.org database

Proteogenomics from a bioinformatics angle : a growing field

Ribosome signatures aid bacterial translation initiation site identification

Identification of small novel coding sequences, a proteogenomic endeavor

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