Ghent University Academic Bibliography

Mark

Computational deconvolution of transcriptomics data from mixed cell populations

Francisco Avila Cobos (UGent) , Jo Vandesompele (UGent) , Pieter Mestdagh (UGent) and Katleen De Preter (UGent)

(2018) BIOINFORMATICS. 34(11). p.1969-1979

Mark

journalArticle
A1
open access

Orthology guided transcriptome assembly of Italian ryegrass and meadow fescue for single-nucleotide polymorphism discovery

Štěpán Stočes, Tom Ruttink, Jan Bartoš, Bruno Studer, Steven Yates, Zbigniew Zwierzykowski, Michael Abrouk, Isabel Roldàn-Ruiz (UGent) , Tomasz Książczyk, Elodie Rey, et al.

(2016) PLANT GENOME. 9(3).

Mark

journalArticle
A1
open access

Serendipitous meta-transcriptomics : the fungal community of Norway spruce (Picea abies)

Nicolas Delhomme, Gorel Sundstrom, Neda Zamani, Henrik Lantz, Yao-Cheng Lin (UGent) , Torgeir R Hvidsten, Marc P Hoppner, Patric Jern, Yves Van de Peer (UGent) , Joakim Lundeberg, et al.

(2015) PLOS ONE. 10(9).

Mark

journalArticle
A1
open access

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data

Sandra Steyaert (UGent) , Wim Van Criekinge (UGent) , Ayla De Paepe, Simon Denil (UGent) , Klaas Mensaert (UGent) , Katrien Vandepitte, Wim Vanden Berghe (UGent) , Geert Trooskens (UGent) and Tim De Meyer (UGent)

(2014) NUCLEIC ACIDS RESEARCH. 42(20).

Mark

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

Alexander Koch (UGent) , Daria Fijalkowska (UGent) , Sandra Steyaert (UGent) , Elvis Ndah (UGent) , Jeroen Crappé (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Ming Ma, Ben Shen, Kris Gevaert (UGent) , et al.

(2014) PROTEOMICS. 14(23-24). p.2688-2698

Mark

Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne

Tom Ruttink, Lieven Sterck (UGent) , Antje Rohde (UGent) , Christian Bendixen, Pierre Rouzé (UGent) , Torben Asp, Yves Van de Peer (UGent) and Isabel Roldàn-Ruiz (UGent)

(2013) PLANT BIOTECHNOLOGY JOURNAL. 11(5). p.605-617

Mark

journalArticle
A1
open access

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

Sandra Soetaert (UGent) , Christophe Van Neste (UGent) , Mado Vandewoestyne (UGent) , Steven R Head, Alain Goossens (UGent) , Filip Van Nieuwerburgh (UGent) and Dieter Deforce (UGent)

(2013) BMC PLANT BIOLOGY. 13.

Mark

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

Gerben Menschaert (UGent) , Wim Van Criekinge (UGent) , Tineke Notelaers, Alexander Koch (UGent) , Jeroen Crappé (UGent) , Kris Gevaert (UGent) and Petra Van Damme (UGent)

(2013) MOLECULAR & CELLULAR PROTEOMICS. 12(7). p.1780-1790

Mark

Transcriptome analysis of the citrus red mite, Panonychus citri, and its gene expression by exposure to insecticide/acaricide

J-Z Niu, W Dou, T-B Ding, G-M Shen, K Zhang, Guy Smagghe (UGent) and J-J Wang

(2012) INSECT MOLECULAR BIOLOGY. 21(4). p.422-436

Academic Bibliography

Computational deconvolution of transcriptomics data from mixed cell populations

Orthology guided transcriptome assembly of Italian ryegrass and meadow fescue for single-nucleotide polymorphism discovery

Serendipitous meta-transcriptomics : the fungal community of Norway spruce (Picea abies)

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

Transcriptome analysis of the citrus red mite, Panonychus citri, and its gene expression by exposure to insecticide/acaricide

Contents

Support

Contact