Ghent University Academic Bibliography

Journal Article
A1
open access

Sequence count data are poorly fit by the negative binomial distribution

Stijn Hawinkel (UGent) , JCW Rayner, Luc Bijnens and Olivier Thas (UGent)

(2020) PLOS ONE. 15(4).

Computational deconvolution of transcriptomics data from mixed cell populations

Francisco Avila Cobos (UGent) , Jo Vandesompele (UGent) , Pieter Mestdagh (UGent) and Katleen De Preter (UGent)

(2018) BIOINFORMATICS. 34(11). p.1969-1979

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Journal Article
A1
open access

A comprehensive pan-cancer molecular study of gynecologic and breast cancers

Ashton C Berger, Anil Korkut, Rupa S Kanchi, Apurva M Hegde, Walter Lenoir, Wenbin Liu, Yuexin Liu, Huihui Fan, Hui Shen, Visweswaran Ravikumar, et al.

(2018) CANCER CELL. 33(4). p.690-705

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Journal Article
A1
open access

Orthology guided transcriptome assembly of Italian ryegrass and meadow fescue for single-nucleotide polymorphism discovery

Štěpán Stočes, Tom Ruttink, Jan Bartoš, Bruno Studer, Steven Yates, Zbigniew Zwierzykowski, Michael Abrouk, Isabel Roldàn-Ruiz (UGent) , Tomasz Książczyk, Elodie Rey, et al.

(2016) PLANT GENOME. 9(3).

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Journal Article
A1
open access

Serendipitous meta-transcriptomics : the fungal community of Norway spruce (Picea abies)

Nicolas Delhomme, Gorel Sundstrom, Neda Zamani, Henrik Lantz, Yao-Cheng Lin (UGent) , Torgeir R Hvidsten, Marc P Hoppner, Patric Jern, Yves Van de Peer (UGent) , Joakim Lundeberg, et al.

(2015) PLOS ONE. 10(9).

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A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

Alexander Koch (UGent) , Daria Fijalkowska (UGent) , Sandra Steyaert (UGent) , Elvis Ndah (UGent) , Jeroen Crappé (UGent) , Sarah De Keulenaer (UGent) , Ellen De Meester (UGent) , Ming Ma, Ben Shen, Kris Gevaert (UGent) , et al.

(2014) PROTEOMICS. 14(23-24). p.2688-2698

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Journal Article
A1
open access

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data

Sandra Steyaert (UGent) , Wim Van Criekinge (UGent) , Ayla De Paepe, Simon Denil (UGent) , Klaas Mensaert (UGent) , Katrien Vandepitte, Wim Vanden Berghe (UGent) , Geert Trooskens (UGent) and Tim De Meyer (UGent)

(2014) NUCLEIC ACIDS RESEARCH. 42(20).

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Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

Gerben Menschaert (UGent) , Wim Van Criekinge (UGent) , Tineke Notelaers, Alexander Koch (UGent) , Jeroen Crappé (UGent) , Kris Gevaert (UGent) and Petra Van Damme (UGent)

(2013) MOLECULAR & CELLULAR PROTEOMICS. 12(7). p.1780-1790

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Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne

Tom Ruttink, Lieven Sterck (UGent) , Antje Rohde (UGent) , Christian Bendixen, Pierre Rouzé (UGent) , Torben Asp, Yves Van de Peer (UGent) and Isabel Roldàn-Ruiz (UGent)

(2013) PLANT BIOTECHNOLOGY JOURNAL. 11(5). p.605-617

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Journal Article
A1
open access

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

Sandra Soetaert (UGent) , Christophe Van Neste (UGent) , Mado Vandewoestyne, Steven R Head, Alain Goossens (UGent) , Filip Van Nieuwerburgh (UGent) and Dieter Deforce (UGent)

(2013) BMC PLANT BIOLOGY. 13.

Academic Bibliography

Sequence count data are poorly fit by the negative binomial distribution

Computational deconvolution of transcriptomics data from mixed cell populations

A comprehensive pan-cancer molecular study of gynecologic and breast cancers

Orthology guided transcriptome assembly of Italian ryegrass and meadow fescue for single-nucleotide polymorphism discovery

Serendipitous meta-transcriptomics : the fungal community of Norway spruce (Picea abies)

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

SNP-guided identification of monoallelic DNA-methylation events from enrichment-based sequencing data

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne

Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

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