Ghent University Academic Bibliography

Journal Article
A1
open access

Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

Lucas Prost (UGent) , Quinten Bafort (UGent) , Antoine Van de Vloet (UGent) , Fabricio De Almeida Silva (UGent) , Yunn Thet Paing (UGent) , Griet Casteleyn (UGent) , Sofie D'hondt (UGent) , Olivier De Clerck (UGent) and Yves Van de Peer (UGent)

(2025) NEW PHYTOLOGIST. 245(22). p.869-884

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Journal Article
A1
open access

ELLIPSIS : robust quantification of splicing in scRNA-seq

Marie Van Hecke (UGent) , Niko Beerenwinkel, Thibault Lootens (UGent) , Jan Fostier (UGent) , Robrecht Raedt (UGent) and Kathleen Marchal (UGent)

(2025) BIOINFORMATICS. 41(2).

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Journal Article
A1
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Single-cell transcriptomics reveals heterogeneity in plant responses to the environment : a focus on biotic and abiotic interactions

Rubén Tenorio Berrio (UGent) and Marieke Dubois (UGent)

(2024) JOURNAL OF EXPERIMENTAL BOTANY. 75(17). p.5188-5203

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Journal Article
A1
open access

Immunomodulation by glucocorticoid-induced leucine zipper in macrophages : enhanced phagocytosis, protection from pyroptosis, and altered mitochondrial function

Thierry M. Legroux, Hanna S. Schymik, Gilles Gasparoni, Saeed Mohammadi, Joern Walter, Claude Libert (UGent) , Britta Diesel, Jessica Hoppstaedter and Alexandra K. Kiemer

(2024) FRONTIERS IN IMMUNOLOGY. 15.

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Journal Article
A1
open access

A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data

Jens Uwe Loers (UGent) and Vanessa Vermeirssen (UGent)

(2024) BRIEFINGS IN BIOINFORMATICS. 25(5).

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Journal Article
A1
open access

Post-feeding transcriptomics reveals essential genes expressed in the midgut of the desert locust

Joachim Van Lommel, Michiel Holtof, Laurentijn Tilleman (UGent) , Dorien Cools, Seppe Vansteenkiste, Daria Polgun, Rik Verdonck, Filip Van Nieuwerburgh (UGent) and Jozef Vanden Broeck

(2023) FRONTIERS IN PHYSIOLOGY. 14.

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Journal Article
A1
open access

IL-5-producing CD4+ T cells and eosinophils cooperate to enhance response to immune checkpoint blockade in breast cancer

Olga S. Blomberg, Lorenzo Spagnuolo, Hannah Garner, Leonie Voorwerk, Olga I. Isaeva, Ewald van Dyk, Noor Bakker, Myriam Chalabi, Chris Klaver, Maxime Duijst, et al.

(2023) CANCER CELL. 41(1). p.106-123.e10

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Journal Article
A1
open access

Transcriptome analysis of Arcobacter butzleri infection in a mucus-producing human intestinal in vitro model

Davide Buzzanca, Valentina Alessandria, Cristian Botta, Negin Seif Zadeh, Ilario Ferrocino, Kurt Houf (UGent) , Luca Cocolin and Kalliopi Rantsiou

(2023) MICROBIOLOGY SPECTRUM. 11(1).

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Journal Article
A1
open access

Multiplexed target enrichment of coding and non-coding transcriptomes enables studying Candida spp. infections from human derived samples

Hrant Hovhannisyan, Antonio Rodriguez Sánchez, Ester Saus, Mario Vaneechoutte (UGent) and Toni Gabaldón

(2023) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 13.

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Journal Article
A1
open access

Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment

Leilei Li (UGent) , Moritz Kaufmann, Moffat Makechemu, Christof Van Poucke (UGent) , ellen de keyser (UGent) , Mieke Uyttendaele (UGent) , Cyril Zipfel, Bart Cottyn (UGent) and Joël F. Pothier

(2023) FRONTIERS IN PLANT SCIENCE. 14.

Academic Bibliography

Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

ELLIPSIS : robust quantification of splicing in scRNA-seq

Single-cell transcriptomics reveals heterogeneity in plant responses to the environment : a focus on biotic and abiotic interactions

Immunomodulation by glucocorticoid-induced leucine zipper in macrophages : enhanced phagocytosis, protection from pyroptosis, and altered mitochondrial function

A single-cell multimodal view on gene regulatory network inference from transcriptomics and chromatin accessibility data

Post-feeding transcriptomics reveals essential genes expressed in the midgut of the desert locust

IL-5-producing CD4+ T cells and eosinophils cooperate to enhance response to immune checkpoint blockade in breast cancer

Transcriptome analysis of Arcobacter butzleri infection in a mucus-producing human intestinal in vitro model

Multiplexed target enrichment of coding and non-coding transcriptomes enables studying Candida spp. infections from human derived samples

Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment

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