Ghent University Academic Bibliography

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De novo and inherited dominant variants in U4 and U6 snRNA genes cause retinitis pigmentosa

Mathieu Quinodoz, Kim Rodenburg, Zuzana Cvackova, Karolina Kaminska, Suzanne E. de Bruijn, Ana Belen Iglesias-Romero, Erica G. M. Boonen, Mukhtar Ullah, Nick Zomer, Marc Folcher, et al.

(2026) NATURE GENETICS. 58(1). p.169-179
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Shotgun metagenomic composition, microbial interactions and functional insights into the uterine microbiome of postpartum dairy cows with clinical and subclinical endometritis

Muhammad Hussnain Rashid (UGent) , Osvaldo Américo Bogado Pascottini (UGent) , Lei Xie (UGent) , Mehrnaz Niazi, Leen Lietaer, Ugur Comlekcioglu (UGent) and Geert Opsomer (UGent)

(2025) SCIENTIFIC REPORTS. 15(1).
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Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products

Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Yari Van Laere (UGent) , Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens and Kevin Vanneste

(2025) FOOD CHEMISTRY: MOLECULAR SCIENCES. 10.
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b-move : faster lossless approximate pattern matching in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, Travis Gagie and Jan Fostier (UGent)

(2025) ALGORITHMS FOR MOLECULAR BIOLOGY. 20(1).
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Columba : fast approximate pattern matching with optimized search schemes

Luca Renders (UGent) , Lore Depuydt (UGent) , Travis Gagie and Jan Fostier (UGent)

(2025) BIOINFORMATICS. 41(12).
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Loss of function of the zinc finger homeobox 4 gene, ZFHX4, underlies a neurodevelopmental disorder

Maria del Rocio Pérez Baca (UGent) , María Palomares-Bralo, Michiel Vanhooydonck (UGent) , Lisa Hamerlinck (UGent) , Eva D'haene (UGent) , Sebastian Leimbacher (UGent) , Eva Jacobs, Laurenz De Cock, Erika D'haenens (UGent) , Annelies Dheedene (UGent) , et al.

(2025) AMERICAN JOURNAL OF HUMAN GENETICS. 112(6). p.1388-1414
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Faster maximal exact matches with lazy LCP evaluation

Adrián Goga, Lore Depuydt (UGent) , Nathaniel K. Brown, Jan Fostier (UGent) , Travis Gagie and Gonzalo Navarro

(2024) 2024 Data Compression Conference (DCC). In IEEE Data Compression Conference p.123-132
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Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

France Denoeud, Olivier Godfroy, Corinne Cruaud, Svenja Heesch, Zofia Nehr, Nachida Tadrent, Arnaud Couloux, Loraine Brillet-Guéguen, Ludovic Delage, Dean Mckeown, et al.

(2024) CELL. 187(24). p.6943-6965.e39
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B-move : faster bidirectional character extensions in a run-length compressed index

Lore Depuydt (UGent) , Luca Renders (UGent) , Simon Van de Vyver (UGent) , Lennart Veys, T. Gagie and Jan Fostier (UGent)

(2024) 24TH INTERNATIONAL WORKSHOP ON ALGORITHMS IN BIOINFORMATICS, WABI 2024. In Leibniz International Proceedings in Informatics (LIPIcs) 312. p.1-18
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Pan-genome de Bruijn graph using the bidirectional FM-index

Lore Depuydt (UGent) , Luca Renders (UGent) , Thomas Abeel (UGent) and Jan Fostier (UGent)

(2023) BMC BIOINFORMATICS. 24(1).

Academic Bibliography

De novo and inherited dominant variants in U4 and U6 snRNA genes cause retinitis pigmentosa

Shotgun metagenomic composition, microbial interactions and functional insights into the uterine microbiome of postpartum dairy cows with clinical and subclinical endometritis

Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products

b-move : faster lossless approximate pattern matching in a run-length compressed index

Columba : fast approximate pattern matching with optimized search schemes

Loss of function of the zinc finger homeobox 4 gene, ZFHX4, underlies a neurodevelopmental disorder

Faster maximal exact matches with lazy LCP evaluation

Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems

B-move : faster bidirectional character extensions in a run-length compressed index

Pan-genome de Bruijn graph using the bidirectional FM-index

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