Ghent University Academic Bibliography

Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

Kenneth Verheggen (UGent) , Helge Raeder, Frode S Berven, Lennart Martens (UGent) , Harald Barsnes and Marc Vaudel

(2020) MASS SPECTROMETRY REVIEWS. 39(3). p.292-306

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ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Niels Hulstaert (UGent) , Jim Shofstahl, Timo Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens (UGent) and Yasset Perez-Riverol

(2020) JOURNAL OF PROTEOME RESEARCH. 19(1). p.537-542

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Journal Article
A1
open access

Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine

Bert Dhondt (UGent) , Edward Geeurickx (UGent) , Joeri Tulkens (UGent) , Jan Van Deun (UGent) , Glenn Vergauwen (UGent) , Lien Lippens (UGent) , Ilkka Miinalainen, Pekka Rappu, Jyrki Heino, Piet Ost (UGent) , et al.

(2020) JOURNAL OF EXTRACELLULAR VESICLES. 9(1).

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Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed

Daria Fijalkowska (UGent) , Igor Fijalkowski (UGent) , Patrick Willems (UGent) and Petra Van Damme (UGent)

(2020) FEMS MICROBIOLOGY REVIEWS. 44(4). p.418-431

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Conference Paper
C3
open access

The HUPO-PSI standardized spectral library format

Ralf Gabriels (UGent) , Nuno Bandeira, Wout Bittremieux, Jeremy J Carver, Matthew Chambers, Shin Kawano, Henry Lam, Tytus Mak, Yasset Perez-Riverol, Benjamin J Pullman, et al.

(2020) EuBIC 2020 developers' meeting.

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The age of data-driven proteomics : how machine learning enables novel workflows

Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2020) PROTEOMICS. 20(21-22).

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Journal Article
A1
open access

Maternal recognition of pregnancy in the horse : are MicroRNAs the secret messengers?

Katrien Smits (UGent) , Yannick Gansemans (UGent) , Laurentijn Tilleman (UGent) , Filip Van Nieuwerburgh (UGent) , Margot Van de Velde (UGent) , Ilse Gerits (UGent) , Cyrillus Ververs (UGent) , Kim Roels (UGent) , Jan Govaere (UGent) , Luc Peelman (UGent) , et al.

(2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 21(2).

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Journal Article
A2
open access

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Sigrid Verhelst (UGent) , Laura De Clerck (UGent) , Sander Willems (UGent) , Bart Van Puyvelde (UGent) , Simon Daled (UGent) , Dieter Deforce (UGent) and Maarten Dhaenens (UGent)

(2020) METHODSX. 7.

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Journal Article
A1
open access

Extracellular vesicles in patients in the acute phase of psychosis and after clinical improvement : an explorative study

Mette Elise Tunset, Hanne Haslene-Hox, Tim Van Den Bossche (UGent) , Arne Einar Vaaler, Einar Sulheim and Daniel Kondziella

(2020) PEERJ. 8.

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Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban Ramasamy (UGent) , Demet Turan (UGent) , Natalia Tichshenko (UGent) , Niels Hulstaert (UGent) , Elien Vandermarliere (UGent) , Wim Vranken and Lennart Martens (UGent)

(2020) JOURNAL OF PROTEOME RESEARCH. 19(8). p.3478-3486

Academic Bibliography

Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Unravelling the proteomic landscape of extracellular vesicles in prostate cancer by density-based fractionation of urine

Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed

The HUPO-PSI standardized spectral library format

The age of data-driven proteomics : how machine learning enables novel workflows

Maternal recognition of pregnancy in the horse : are MicroRNAs the secret messengers?

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Extracellular vesicles in patients in the acute phase of psychosis and after clinical improvement : an explorative study

Scop3P : a comprehensive resource of human phosphosites within their full context

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