Ghent University Academic Bibliography

Journal Article
A1
open access

Spectral prediction features as a solution for the search space size problem in proteogenomics

Steven Verbruggen (UGent) , Siegfried Gessulat, Ralf Gabriels (UGent) , Anna Matsaroki (UGent) , Hendrik Van de Voorde (UGent) , Bernhard Kuster, Sven Degroeve (UGent) , Lennart Martens (UGent) , Wim Van Criekinge (UGent) , Mathias Wilhelm, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.

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The age of data-driven proteomics : how machine learning enables novel workflows

Robbin Bouwmeester (UGent) , Ralf Gabriels (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2020) PROTEOMICS. 20(21-22).

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Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

Kenneth Verheggen (UGent) , Helge Raeder, Frode S Berven, Lennart Martens (UGent) , Harald Barsnes and Marc Vaudel

(2020) MASS SPECTROMETRY REVIEWS. 39(3). p.292-306

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Journal Article
A1
open access

Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions

Ana Sílvia Ferreira Diamantino Coelho e Silva, Robbin Bouwmeester (UGent) , Lennart Martens (UGent) and Sven Degroeve (UGent)

(2019) BIOINFORMATICS. 35(24). p.5243-5248

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Selection of egg peptide biomarkers in processed food products by high resolution mass spectrometry

M Gavage, Kaatje Van Vlierberghe, C Van Poucke, M De Loose, Kris Gevaert (UGent) , M Dieu, P Renard, T Arnould and N Gillard

(2019) JOURNAL OF CHROMATOGRAPHY A. 1584. p.115-125

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Flagging false positives following untargeted LCMS characterization of histone PTM combinations

Sander Willems, Maarten Dhaenens (UGent) , Elisabeth Govaert, Laura De Clerck (UGent) , Paulien Meert (UGent) , Christophe Van Neste (UGent) , Filip Van Nieuwerburgh (UGent) and Dieter Deforce (UGent)

(2017) JOURNAL OF PROTEOME RESEARCH. 16(2). p.655-664

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Journal Article
A1
open access

A golden age for working with public proteomics data

Lennart Martens (UGent) and Juan Antonio Vizcaíno

(2017) TRENDS IN BIOCHEMICAL SCIENCES. 42(5). p.333-341

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Quality control in mass spectrometry-based proteomics

Wout Bittremieux, David L Tabb, Francis Impens (UGent) , An Staes (UGent) , Evy Timmerman (UGent) , Lennart Martens (UGent) and Kris Laukens

(2017) MASS SPECTROMETRY REVIEWS. 37(5). p.697-711

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Miscellaneous

Proteomics Standards Initiative : fifteen years of progress and future work

Eric W Deutsch, Sandra Orchard, Pierre-Alain Binz, Wout Bittremieux, Martin Eisenacher, Henning Hermjakob, Shin Kawano, Henry Lam, Gerhard Mayer, Gerben Menschaert (UGent) , et al.

(2017) JOURNAL OF PROTEOME RESEARCH. 16(12). p.4288-4298

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Metaproteomic data analysis at a glance : advances in computational microbial community proteomics

Thilo Muth, Bernhard Y Renard and Lennart Martens (UGent)

(2016) EXPERT REVIEW OF PROTEOMICS. 13(8). p.757-769

Academic Bibliography

Spectral prediction features as a solution for the search space size problem in proteogenomics

The age of data-driven proteomics : how machine learning enables novel workflows

Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions

Selection of egg peptide biomarkers in processed food products by high resolution mass spectrometry

Flagging false positives following untargeted LCMS characterization of histone PTM combinations

A golden age for working with public proteomics data

Quality control in mass spectrometry-based proteomics

Proteomics Standards Initiative : fifteen years of progress and future work

Metaproteomic data analysis at a glance : advances in computational microbial community proteomics

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