Ghent University Academic Bibliography

Classification of collagens via peptide ambiguation, in a paleoproteomic LC-MS/MS-based taxonomic pipeline

Ian Engels (UGent) , Alexandra Burnett (UGent) , Prudence Robert (UGent) , Camille Pironneau (UGent) , Grégory Abrams (UGent) , Robbin Bouwmeester (UGent) , Peter Van Der Plaetsen, Kévin Di Modica, Marcel Otte, Lawrence Guy Straus, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.1907-1925

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Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

Patrick Willems (UGent) , Fabien Henri Thery (UGent) , Laura Van Moortel (UGent) , Margaux De Meyer (UGent) , An Staes (UGent) , Adillah Gul (UGent) , Lyudmila Kovalchuke (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Robbin Bouwmeester (UGent) , et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.2141-2151

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Applications of unmanned vehicle systems for multi-spatial scale monitoring and management of aquatic ecosystems : a review

Xingzhen Liu (UGent) , Long Tuan Ho (UGent) , Stijn Bruneel (UGent) and Peter Goethals (UGent)

(2025) ECOLOGICAL INFORMATICS. 85.

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Proximal partners of the organellar N-terminal acetyltransferase NAA60 : insights into Golgi structure and transmembrane protein topology

Sebastian Tanco (UGent) , Veronique Jonckheere (UGent) , Arun Kumar Tharkeshwar Raghunath, Annelies Bogaert, Kris Gevaert (UGent) , Wim Anneart and Petra Van Damme (UGent)

(2025) OPEN BIOLOGY. 15(2).

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Efficient modeling and optimization approach for grating-based flow cytometers

Adam Barzanji (UGent) , Thijs Ullrick (UGent) , Kristof Cools (UGent) , Tom Reep (UGent) , Niels Verellen, Gunay Yurtsever and Wim Bogaerts (UGent)

(2025) OPTICS EXPRESS. 33(3). p.4604-4624

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Ageing signatures and disturbed muscle regeneration in muscle proteome of inclusion body myositis

Geert M. de Vries, Bob Asselbergh, Alice Monticelli, Peter De Jonghe, Stuart Maudsley, Peter Y. K. Van Den Bergh, Anne Bigot, Jan De Bleecker (UGent) , Biljana Ermanoska, Willem De Ridder, et al.

(2025) JOURNAL OF CACHEXIA SARCOPENIA AND MUSCLE. 16(3).

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Kupffer cell programming by maternal obesity triggers fatty liver disease

Hao Huang, Nora R. Balzer, Lea Seep, Iva Splichalova, Nelli Blank-Stein, Maria Francesca Viola, Eliana Franco Taveras, Kerim Acil, Diana Fink, Franzisca Petrovic, et al.

(2025) NATURE. 644(8077). p.790-798

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Automated integration and quality assessment of chromatographic peaks in LC–MS-based metabolomics and lipidomics using TARDIS

Pablo Vangeenderhuysen (UGent) , Matthijs Vynck (UGent) , Beata Pomian (UGent) , Kimberly De Windt (UGent) , Emile Callemeyn (UGent) , Ellen De Paepe (UGent) , Lindsey De Commer, Jeroen Raes, Tim Nawrot, Johannes Rainer, et al.

(2025) ANALYTICAL CHEMISTRY. 97(18). p.9927-9934

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Plasmodesmata act as unconventional membrane contact sites regulating intercellular molecular exchange in plants

Jessica Pérez-Sancho, Marija Smokvarska, Gwennogan Dubois, Marie Glavier, Sujith Sritharan, Tatiana S. Moraes, Hortense Moreau, Victor Dietrich, Matthieu P. Platre, Andrea Paterlini, et al.

(2025) CELL. 188(4). p.958-977.e23

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Precise, predictable genome integrations by deep-learning-assisted design of microhomology-based templates

Thomas Naert (UGent) , Taiyo Yamamoto, Shuting Han, Ruth Röck, Melanie Horn, Philipp Bethge, Nikita Vladimirov, Fabian F. Voigt, Joana Figueiro-Silva, Ruxandra Bachmann-Gagescu, et al.

(2025) NATURE BIOTECHNOLOGY.

Academic Bibliography

Classification of collagens via peptide ambiguation, in a paleoproteomic LC-MS/MS-based taxonomic pipeline

Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

Applications of unmanned vehicle systems for multi-spatial scale monitoring and management of aquatic ecosystems : a review

Proximal partners of the organellar N-terminal acetyltransferase NAA60 : insights into Golgi structure and transmembrane protein topology

Efficient modeling and optimization approach for grating-based flow cytometers

Ageing signatures and disturbed muscle regeneration in muscle proteome of inclusion body myositis

Kupffer cell programming by maternal obesity triggers fatty liver disease

Automated integration and quality assessment of chromatographic peaks in LC–MS-based metabolomics and lipidomics using TARDIS

Plasmodesmata act as unconventional membrane contact sites regulating intercellular molecular exchange in plants

Precise, predictable genome integrations by deep-learning-assisted design of microhomology-based templates

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