Ghent University Academic Bibliography

PhD Thesis
open access

Characterization of antimicrobial resistance in bacteria, including plasmids, through the development of a generic NGS-based workflow

Johannes Berbers (UGent)

(2026)

Journal Article
A1
open access

Unravelling faecal microbiota variations in equine atypical myopathy : correlation with blood markers and contribution of microbiome

Anne-Christine Francois, Carla Cesarini, Bernard Taminiau, Benoit Renaud, Caroline-Julia Kruse, Francois Boemer, Gunther van Loon (UGent) , Katrien Palmers, Georges Daube, Clovis P. Wouters, et al.

(2025) ANIMALS. 15(3).

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Journal Article
A1
open access

ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expression

Tzu-Po Chuang, Wei-Yun Lai, Jonatan Linus Gabre (UGent) , Dan E. Lind, Ganesh Umapathy, Abdulmalik A. Bokhari, Bengt Bergman, Linnea Kristenson, Fredrik B. Thorén, Anh Le, et al.

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(8).

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Journal Article
A1
open access

RNA extraction method impacts quality metrics and sequencing results in formalin-fixed, paraffin-embedded tissue samples

Philippe Decruyenaere (UGent) , Kimberly Verniers (UGent) , Franco Alexander Poma Soto (UGent) , Jo Van Dorpe (UGent) , Fritz Offner (UGent) and Jo Vandesompele (UGent)

(2023) LABORATORY INVESTIGATION. 103(2).

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Journal Article
A2
open access

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

Assia Saltykova, Julien Van Braekel, Nina Papazova, Marie-Alice Fraiture, Dieter Deforce (UGent) , Kevin Vanneste, Sigrid C. J. De Keersmaecker and Nancy H. Roosens

(2022) FOOD CHEMISTRY: MOLECULAR SCIENCES. 4.

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Journal Article
A1
open access

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert Bogaerts, Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2021) MICROBIAL GENOMICS. 7(11).

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Journal Article
A1
open access

Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing

Laura Van Poelvoorde, Thomas Delcourt, Wim Coucke, Philippe Herman, Sigrid C. J. De Keersmaecker, Xavier Saelens (UGent) , Nancy H. C. Roosens and Kevin Vanneste

(2021) FRONTIERS IN MICROBIOLOGY. 12.

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Journal Article
A1
open access

A novel non-coding variant in DCLRE1C results in deregulated splicing and induces SCID through the generation of a truncated ARTEMIS protein that fails to support V(D)J recombination and DNA damage repair

Steven Strubbe, Marieke De Bruyne (UGent) , Ulrich Pannicke, Elien Beyls (UGent) , Bart Vandekerckhove (UGent) , Georges Leclercq (UGent) , Elfride De Baere (UGent) , Victoria Bordon, Anne Vral (UGent) , Klaus Schwarz, et al.

(2021) FRONTIERS IN IMMUNOLOGY. 12.

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Journal Article
A1
open access

PCIP-seq : simultaneous sequencing of integrated viral genomes and their insertion sites with long reads

Maria Artesi, Vincent Hahaut, Basiel Cole, Laurens Lambrechts, Fereshteh Ashrafi, Ambroise Marçais, Olivier Hermine, Philip Griebel, Natasa Arsic, Frank van der Meer, et al.

(2021) GENOME BIOLOGY. 22(1).

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Journal Article
A1
open access

Emerging PCR-based techniques to study HIV-1 reservoir persistence

Laurens Lambrechts, Basiel Cole, Sofie Rutsaert (UGent) , Wim Trypsteen (UGent) and Linos Vandekerckhove (UGent)

(2020) VIRUSES-BASEL. 12(2).

Academic Bibliography

Characterization of antimicrobial resistance in bacteria, including plasmids, through the development of a generic NGS-based workflow

Unravelling faecal microbiota variations in equine atypical myopathy : correlation with blood markers and contribution of microbiome

ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expression

RNA extraction method impacts quality metrics and sequencing results in formalin-fixed, paraffin-embedded tissue samples

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing

A novel non-coding variant in DCLRE1C results in deregulated splicing and induces SCID through the generation of a truncated ARTEMIS protein that fails to support V(D)J recombination and DNA damage repair

PCIP-seq : simultaneous sequencing of integrated viral genomes and their insertion sites with long reads

Emerging PCR-based techniques to study HIV-1 reservoir persistence

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