Ghent University Academic Bibliography

Fast profiling of protease specificity reveals similar substrate specificities for cathepsins K, L and S

Matej Vizovišek, Robert Vidmar, Emmy Van Quickelberghe (UGent) , Francis Impens (UGent) , Uroš Andjelković, Barbara Sobotič, Veronika Stoka, Kris Gevaert (UGent) , Boris Turk and Marko Fonović

(2015) PROTEOMICS. 15(14). p.2479-2490

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A COFRADIC protocol to study protein ubiquitination

Elisabeth Stes (UGent) , Mathias Laga (UGent) , Alan Walton (UGent) , Noortje Samyn (UGent) , Evy Timmerman (UGent) , Ive De Smet (UGent) , Sofie Goormachtig (UGent) and Kris Gevaert (UGent)

(2014) JOURNAL OF PROTEOME RESEARCH. 13(6). p.3107-3113

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Holistic view on the extended substrate specificities of orthologous granzymes

Kim Plasman (UGent) , Sebastian Maurer-Stroh, Kris Gevaert (UGent) and Petra Van Damme (UGent)

(2014) JOURNAL OF PROTEOME RESEARCH. 13(4). p.1785-1793

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The proteome under translational control

Daria Fijalkowska (UGent) , Kris Gevaert (UGent) and Petra Van Damme (UGent)

(2014) PROTEOMICS. 14(23-24). p.2647-2659

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Journal Article
A1
open access

Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B

Petra Van Damme (UGent) , Kim Plasman (UGent) , Giel Vandemoortele, Veronique Jonckheere (UGent) , Sebastian Maurer-Stroh and Kris Gevaert (UGent)

(2014) BMC BIOCHEMISTRY. 15.

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Contemporary positional proteomics strategies to study protein processing

Kim Plasman (UGent) , Petra Van Damme (UGent) and Kris Gevaert (UGent)

(2013) CURRENT OPINION IN CHEMICAL BIOLOGY. 17(1). p.66-72

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Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

Gerben Menschaert (UGent) , Wim Van Criekinge (UGent) , Tineke Notelaers, Alexander Koch (UGent) , Jeroen Crappé (UGent) , Kris Gevaert (UGent) and Petra Van Damme (UGent)

(2013) MOLECULAR & CELLULAR PROTEOMICS. 12(7). p.1780-1790

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The Arabidopsis METACASPASE9 degradome

Liana Tsiatsiani (UGent) , Evy Timmerman (UGent) , Pieter-Jan De Bock, Dominique Vercammen, Simon Stael (UGent) , Brigitte Van De Cotte (UGent) , An Staes (UGent) , Marc Goethals (UGent) , Tine Beunens (UGent) , Petra Van Damme (UGent) , et al.

(2013) PLANT CELL. 25(8). p.2831-2847

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SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping

Lazaro H Betancourt, Pieter-Jan De Bock, An Staes (UGent) , Evy Timmerman (UGent) , Yasset Perez-Riverol, Aniel Sanchez, Vladimir Besada, Luis Javier Gonzalez, Joël Vandekerckhove (UGent) and Kris Gevaert (UGent)

(2013) JOURNAL OF PROTEOMICS. 91. p.164-171

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Journal Article
A1
open access

Mapping proteolytic processing in the secretome of gastric cancer-associated myofibroblasts reveals activation of MMP-1, MMP-2, and MMP-3

Christopher Holmberg, Bart Ghesquière (UGent) , Francis Impens (UGent) , Kris Gevaert (UGent) , J Dinesh Kumar, Nicole Cash, Sandhir Kandola, Peter Hegyi, Timothy C Wang, Graham J Dockray, et al.

(2013) JOURNAL OF PROTEOME RESEARCH. 12(7). p.3413-3422

Academic Bibliography

Fast profiling of protease specificity reveals similar substrate specificities for cathepsins K, L and S

A COFRADIC protocol to study protein ubiquitination

Holistic view on the extended substrate specificities of orthologous granzymes

The proteome under translational control

Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B

Contemporary positional proteomics strategies to study protein processing

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events

The Arabidopsis METACASPASE9 degradome

SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping

Mapping proteolytic processing in the secretome of gastric cancer-associated myofibroblasts reveals activation of MMP-1, MMP-2, and MMP-3

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