Ghent University Academic Bibliography

Journal Article
A1
open access

Environmental DNA metabarcoding captures plankton diversity in the southern North Sea

Ilias Semmouri (UGent) , Michiel De Cooman, Enora Geslain, Filip Volckaert, Colin Janssen (UGent) and Jana Asselman (UGent)

(2026) ICES JOURNAL OF MARINE SCIENCE. 83(5).

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Research Data

Whole-genome sequencing of Staphylococcus aureus strains from UGent-LFMFP

Irene Ortega Sanz (UGent) , Martijn Callens (UGent) and Andreja Rajkovic (UGent)

(2025)

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Conference Paper
C3
open access

DNA-based monitoring for assessing the effect of invasive species on aquatic communities in the Amazon basin of Ecuador

Christine Van der heyden, Lenin Riascos Flores, Andrea Carrera-Gonzalez, Katherine Elizabeth Apunte Ramos, Marcela Carbrera, Rodrigo Espinosa, Pieter Boets, Tom Moens (UGent) , Wim Vanden Berghe, Erik Verbruggen, et al.

(2021) ARPHA CONFERENCE ABSTRACTS. 4.

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Metabarcoding reveals hidden species and improves identification of marine zooplankton communities in the North Sea

Ilias Semmouri (UGent) , Karel De Schamphelaere (UGent) , Stijn Willemse, Michiel Vandegehuchte, Colin Janssen (UGent) and Jana Asselman (UGent)

(2021) ICES JOURNAL OF MARINE SCIENCE. 78(9). p.3411-3427

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Conference Paper
C3
open access

Metabarcoding of marine zooplankton communities in the North Sea using nanopore sequencing

Ilias Semmouri (UGent) , Karel De Schamphelaere (UGent) , Stijn Willemse, Colin Janssen (UGent) , Michiel Vandegehuchte and Jana Asselman (UGent)

(2021) Book of abstracts : VLIZ Marine Science Day 2021. In VLIZ Special Publication 85. p.108-108

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Journal Article
A1
open access

Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination

Bas Berbers, Pieter-Jan Ceyssens, Pierre Bogaerts, Kevin Vanneste (UGent) , Nancy Roosens, Kathleen Marchal (UGent) and Sigrid C.J. De Keersmaecker

(2020) ANTIBIOTICS-BASEL. 9(8).

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Conference Paper
C3
open access

Metatranscriptome of a marine pelagic crustacean community using nanopore sequencing

Ilias Semmouri (UGent) , Karel De Schamphelaere (UGent) , Colin Janssen (UGent) and Jana Asselman (UGent)

(2020) Book of abstracts : VLIZ Marine Science Day 2020. In VLIZ Special Publication 84. p.12-12

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Journal Article
A1
open access

First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015

Cristina Garcia-Graells, Bas Berbers, Bavo Verhaegen, Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens, Nadine Botteldoorn and Sigrid C. J. De Keersmaecker

(2020) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 324.

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Evaluating the potential of direct RNA nanopore sequencing : metatranscriptomics highlights possible seasonal differences in a marine pelagic crustacean zooplankton community

Ilias Semmouri (UGent) , Karel De Schamphelaere (UGent) , Jan Mees (UGent) , Colin Janssen (UGent) and Jana Asselman (UGent)

(2020) MARINE ENVIRONMENTAL RESEARCH. 153.

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Metatranscriptome of a marine pelagic crustacean community using nanopore sequencing

Ilias Semmouri (UGent) , Karel De Schamphelaere (UGent) , Jan Mees (UGent) , Colin Janssen (UGent) and Jana Asselman (UGent)

(2019) Book of abstracts : VLIZ Marine Science Day. Bredene, Belgium, 13 March 2019. In VLIZ Special Publication 83. p.138-138

Academic Bibliography

Environmental DNA metabarcoding captures plankton diversity in the southern North Sea

Whole-genome sequencing of Staphylococcus aureus strains from UGent-LFMFP

DNA-based monitoring for assessing the effect of invasive species on aquatic communities in the Amazon basin of Ecuador

Metabarcoding reveals hidden species and improves identification of marine zooplankton communities in the North Sea

Metabarcoding of marine zooplankton communities in the North Sea using nanopore sequencing

Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination

Metatranscriptome of a marine pelagic crustacean community using nanopore sequencing

First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015

Evaluating the potential of direct RNA nanopore sequencing : metatranscriptomics highlights possible seasonal differences in a marine pelagic crustacean zooplankton community

Metatranscriptome of a marine pelagic crustacean community using nanopore sequencing

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