Ghent University Academic Bibliography

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A proteome-scale map of the human interactome network

Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens (UGent) , Celia Fontanillo, Roberto Mosca, et al.

(2014) CELL. 159(5). p.1212-1226
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Plant protein interactomes

Pascal Braun, Sébastien Aubourg, Jelle Van Leene (UGent) , Geert De Jaeger (UGent) and Claire Lurin

(2013) Annual Review of Plant Biology. 64. p.161-187
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- Journal Article
- A1
- open access
The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

Sofie Van Landeghem (UGent) , Stefanie De Bodt (UGent) , Zuzanna Drebert (UGent) , Dirk Inzé (UGent) and Yves Van de Peer (UGent)

(2013) PLANT CELL. 25(3). p.794-807
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Tackling drought stress: RECEPTOR-LIKE KINASES present new approaches

Alex Marshall, Reidunn B Aalen, Dominique Audenaert (UGent) , Tom Beeckman (UGent) , Martin R Broadley, Melinka A Butenko, Ana I Caño-Delgado, Sacco de Vries, Thomas Dresselhaus, Georg Felix, et al.

(2012) PLANT CELL. 24(6). p.2262-2278
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CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

Stefanie De Bodt (UGent) , Jens Hollunder (UGent) , Hilde Nelissen (UGent) , Nick Meulemeester and Dirk Inzé (UGent)

(2012) NEW PHYTOLOGIST. 195(3). p.707-720
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- Journal Article
- A1
- open access
Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology

Elizabeth J Rossin, Kasper Lage, Soumya Raychaudhuri, Ramnik J Xavier, Diana Tatar, Yair Benita, Chris Cotsapas, Mark J Daly, the International Inflammatory Bowel Disease Genetics Constortium, Martine De Vos (UGent) , et al.

(2011) PLOS GENETICS. 7(1).
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- Journal Article
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An empirical framework for binary interactome mapping

Kavitha Venkatesan, Jean-Francois Rual, Alexei Vazquez, Ulrich Stelzl, Irma Lemmens (UGent) , Tomoko Hirozane-Kishikawa, Tong Hao, Martina Zenkner, Xiaofeng Xin, Kwang-Il Goh, et al.

(2009) NATURE METHODS. 6(1). p.83-90
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- Journal Article
- A1
- open access
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

Stefanie De Bodt (UGent) , Sebastian Proost (UGent) , Klaas Vandepoele (UGent) , Pierre Rouzé (UGent) and Yves Van de Peer (UGent)

(2009) BMC Genomics. 10(288). p.1-15
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Annotating the human proteome: beyond establishing a parts list

Michael Mueller, Lennart Martens (UGent) and Rolf Apweiler

(2007) BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS. 1774(2). p.175-191
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Integration of biological networks and gene expression data using Cytoscape

Melissa S Cline, Michael Smoot, Ethan Cerami, Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, et al.

(2007) NATURE PROTOCOLS. 2(10). p.2366-2382

Academic Bibliography

A proteome-scale map of the human interactome network

Plant protein interactomes

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

Tackling drought stress: RECEPTOR-LIKE KINASES present new approaches

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology

An empirical framework for binary interactome mapping

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

Annotating the human proteome: beyond establishing a parts list

Integration of biological networks and gene expression data using Cytoscape

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