Ghent University Academic Bibliography

A broken promise : microbiome differential abundance methods do not control the false discovery rate

Stijn Hawinkel (UGent) , Federico Mattiello (UGent) , Luc Bijnens and Olivier Thas (UGent)

(2019) BRIEFINGS IN BIOINFORMATICS. 20(1). p.210-221

Cellular and transcriptomic response to treatment with the probiotic candidate Vibrio lentus in gnotobiotic sea bass (Dicentrarchus labrax) larvae

Marlien Schaeck (UGent) , Felipe E Reyes-Lopez, Eva Vallejos-Vidal, Jolien Van Cleemput (UGent) , Luc Duchateau (UGent) , Wim Van Den Broeck (UGent) , Lluis Tort and Annemie Decostere (UGent)

(2017) FISH & SHELLFISH IMMUNOLOGY. 63. p.147-156

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A1
open access

Thermodynamic framework to assess low abundance DNA mutation detection by hybridization

Hanny Willems, An Jacobs, Wahyu Wijaya Hadiwikarta, Tom Venken, Dirk Valkenborg, Nadine Van Roy (UGent) , Jo Vandesompele (UGent) and Jef Hooyberghs

(2017) PLOS ONE. 12(5).

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Decoration of trastuzumab with short oligonucleotides : synthesis and detailed characterization

Ana Margarida Dias Carvalho Da Rocha, Alex Manicardi (UGent) , C Véliz Montes, Smita Gunnoo (UGent) , RJ Schneider and Annemieke Madder (UGent)

(2017) ORGANIC & BIOMOLECULAR CHEMISTRY. 15(42). p.8923-8928

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Molecular analysis of cyenopyrafen resistance in the two-spotted spider mite Tetranychus urticae

Mousaalreza Khaglighi (UGent) , Wannes Dermauw (UGent) , Nicky Wybouw, Sabina Bajda, Masahiro Osakabe, Luc Tirry (UGent) and Thomas Van Leeuwen (UGent)

(2016) PEST MANAGEMENT SCIENCE. 72(1). p.103-112

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A1
open access

An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics

Giel Vandemoortele, An Staes (UGent) , Giulia Gonnelli (UGent) , Noortje Samyn (UGent) , Delphine De Sutter (UGent) , Elien Vandermarliere (UGent) , Evy Timmerman (UGent) , Kris Gevaert (UGent) , Lennart Martens (UGent) and Sven Eyckerman (UGent)

(2016) SCIENTIFIC REPORTS. 6.

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open access

Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method

Lieselot Deleye (UGent) , Dieter De Coninck (UGent) , CHRISTODOULOS CHRISTODOULOU (UGent) , Tom Sante (UGent) , Annelies Dheedene (UGent) , Björn Heindryckx (UGent) , Etienne Van den Abbeel (UGent) , Petra De Sutter (UGent) , Björn Menten (UGent) , Dieter Deforce (UGent) , et al.

(2015) SCIENTIFIC REPORTS. 5.

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The MORPH-R web server and software tool for predicting missing genes in biological pathways

David Amar, Itziar Frades, Tim Diels (UGent) , David Zaltzman, Netanel Ghatan, Pete E Hedley, Erik Alexandersson, Oren Tzfadia (UGent) and Ron Shamir

(2015) PHYSIOLOGIA PLANTARUM. 155(1). p.12-20

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open access

COLOMBOS v2.0 : an ever expanding collection of bacterial expression compendia

Pieter Meysman, Paolo Sonego, Luca Bianco, Qiang Fu, Daniela Ledezma-Tejeida, Socorro Gama-Castro, Veerle Liebens, Jan Michiels, Kris Laukens, Kathleen Marchal (UGent) , et al.

(2014) NUCLEIC ACIDS RESEARCH. 42(D1). p.D649-D653

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open access

Transcriptomic profiling of TK2 deficient human skeletal muscle suggests a role for the p53 signalling pathway and identifies growth and differentiation factor-15 as a potential novel biomarker for mitochondrial myopathies

Susana G Kalko, Sonia Paco, Cristina Jou, Maria Angels Rodríguez, Marija Meznaric, Mihael Rogac, Maja Jekovec-Vrhovsek, Monica Sciacco, Maurizio Moggio, Gigliola Fagiolari, et al.

(2014) BMC GENOMICS. 15.

Academic Bibliography

A broken promise : microbiome differential abundance methods do not control the false discovery rate

Cellular and transcriptomic response to treatment with the probiotic candidate Vibrio lentus in gnotobiotic sea bass (Dicentrarchus labrax) larvae

Thermodynamic framework to assess low abundance DNA mutation detection by hybridization

Decoration of trastuzumab with short oligonucleotides : synthesis and detailed characterization

Molecular analysis of cyenopyrafen resistance in the two-spotted spider mite Tetranychus urticae

An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics

Whole genome amplification with SurePlex results in better copy number alteration detection using sequencing data compared to the MALBAC method

The MORPH-R web server and software tool for predicting missing genes in biological pathways

COLOMBOS v2.0 : an ever expanding collection of bacterial expression compendia

Transcriptomic profiling of TK2 deficient human skeletal muscle suggests a role for the p53 signalling pathway and identifies growth and differentiation factor-15 as a potential novel biomarker for mitochondrial myopathies

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