Ghent University Academic Bibliography

Journal Article
A1
open access

Bacterial species identification using MALDI-TOF mass spectrometry and machine learning techniques : a large-scale benchmarking study

Thomas Mortier (UGent) , Anneleen Wieme (UGent) , Peter Vandamme (UGent) and Willem Waegeman (UGent)

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.6157-6168

Journal Article
A1
open access

Differentiation of gastric helicobacter species using MALDI-TOF mass spectrometry

Helena Berlamont (UGent) , Chloë De Witte (UGent) , Sofie De Bruyckere (UGent) , James G. Fox, Steffen Backert, Annemieke Smet (UGent) , Filip Boyen (UGent) and Freddy Haesebrouck (UGent)

(2021) PATHOGENS. 10(3).

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Journal Article
A1
open access

Network analysis based on unique spectral features enables an efficient selection of genomically diverse operational isolation units

Charles Dumolin (UGent) , Charlotte Peeters (UGent) , Evelien De Canck (UGent) , Nico Boon (UGent) and Peter Vandamme (UGent)

(2021) MICROORGANISMS. 9(2).

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Bacterial shifts on broiler carcasses at retail upon frozen storage

Zhongjia Yu, Marie Joossens (UGent) , Pieter-Jan Kerkhof (UGent) and Kurt Houf (UGent)

(2021) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 340.

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Evaluation of nanopore sequencing as a diagnostic tool for the rapid identification of Mycoplasma bovis from individual and pooled respiratory tract samples

Jade Bokma (UGent) , Nick Vereecke (UGent) , Mathilde Pas (UGent) , Laurens Chantillon, Marianne Vahl, Eefke Weesendorp, Ruud H. Deurenberg, Hans Nauwynck (UGent) , Freddy Haesebrouck (UGent) , Sebastiaan Theuns (UGent) , et al.

(2021) JOURNAL OF CLINICAL MICROBIOLOGY. 59(12).

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Journal Article
A1
open access

Analyses of the bacterial contamination on Belgian broiler carcasses at retail level

Zhongjia Yu, Marie Joossens (UGent) and Kurt Houf (UGent)

(2020) FRONTIERS IN MICROBIOLOGY. 11.

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MALDI-TOF MS as a promising tool to assess potential virulence of Vibrio tapetis isolates

Maaike Vercauteren (UGent) , Alexandra Rahmani, Katleen Vranckx, Filip Boyen (UGent) , Adeline Bidault, Vianney Pichereau, Annemie Decostere (UGent) , Christine Paillard and Koen Chiers (UGent)

(2020) AQUACULTURE. 530.

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MALDI-TOF MS profiling of non-starter lactic acid bacteria from artisanal cheeses of the Greek island of Naxos

Charalampos Gantzias (UGent) , Iliada Lappa, Maarten Aerts, Marina Georgalaki, Eugenia Manolopoulou, Kostas Papadimitriou, Evie De Brandt (UGent) , Effie Tsakalidou and Peter Vandamme (UGent)

(2020) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 323.

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Conference Paper
P1
open access

Investigating time series classification techniques for rapid pathogen identification with single-cell MALDI-TOF mass spectrum data

Christina Papagiannopoulou (UGent) , René Parchen and Willem Waegeman (UGent)

(2020) Machine Learning and Knowledge Discovery in Databases. ECML PKDD 2019. In Lecture Notes in Artificial Intelligence 11908. p.416-431

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Determination of the microbiological contamination in minced pork by culture dependent and 16S amplicon sequencing analysis

Maria Francesca Peruzy, N. Murru, Zhongjia Yu, Margo Cnockaert (UGent) , Marie Joossens (UGent) , Y. T. R. Proroga and Kurt Houf (UGent)

(2019) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 290. p.27-35

Academic Bibliography

Bacterial species identification using MALDI-TOF mass spectrometry and machine learning techniques : a large-scale benchmarking study

Differentiation of gastric helicobacter species using MALDI-TOF mass spectrometry

Network analysis based on unique spectral features enables an efficient selection of genomically diverse operational isolation units

Bacterial shifts on broiler carcasses at retail upon frozen storage

Evaluation of nanopore sequencing as a diagnostic tool for the rapid identification of Mycoplasma bovis from individual and pooled respiratory tract samples

Analyses of the bacterial contamination on Belgian broiler carcasses at retail level

MALDI-TOF MS as a promising tool to assess potential virulence of Vibrio tapetis isolates

MALDI-TOF MS profiling of non-starter lactic acid bacteria from artisanal cheeses of the Greek island of Naxos

Investigating time series classification techniques for rapid pathogen identification with single-cell MALDI-TOF mass spectrum data

Determination of the microbiological contamination in minced pork by culture dependent and 16S amplicon sequencing analysis

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