Ghent University Academic Bibliography

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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert Bogaerts, Raf Winand, Julien Van Braekel, Stefan Hoffman, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker, Kathleen Marchal (UGent) and Kevin Vanneste (UGent)

(2021) MICROBIAL GENOMICS. 7(11).
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Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing

Laura Van Poelvoorde (UGent) , Thomas Delcourt, Wim Coucke, Philippe Herman, Sigrid C. J. De Keersmaecker, Xavier Saelens (UGent) , Nancy H. C. Roosens and Kevin Vanneste

(2021) FRONTIERS IN MICROBIOLOGY. 12.
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Targeting the 16S rRNA gene for bacterial identification in complex mixed samples : comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies

Raf Winand, Bert Bogaerts, Stefan Hoffman, Loïc Lefevre, Maud Delvoye, Julien Van Braekel, Qiang Fu, Nancy HC Roosens, Sigrid CJ De Keersmaecker and Kevin Vanneste

(2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 21(1).
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BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs

Mahdi Heydari, Giles Miclotte (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2018) BMC BIOINFORMATICS. 19.
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Use of next‐generation sequencing in microbial risk assessment

Koenraad Van Hoorde (UGent) and F Butler

(2018) EFSA JOURNAL. 16(suppl. 1).
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Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Mahdi Heydari, Giles Miclotte (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2017) BMC BIOINFORMATICS. 18.
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Evolutionary dynamics of an expressed MHC class IIβ locus in the Ranidae (Anura) uncovered by genome walking and high-throughput amplicon sequencing

Kevin Mulder (UGent) , Maria Cortazar-Chinarro, D. James Harris, Angelica Crottini, Evan H. Campbell Grant, Robert C. Fleischer and Anna E. Savage

(2017) DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY. 76. p.177-188
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Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene

Hans Verstraelen (UGent) , Ramiro Vilchez Vargas (UGent) , Fabian Desimpel, Ruy Jauregui, NELE VANKEIRSBILCK (UGent) , Steven Weyers (UGent) , Rita Verhelst, Petra De Sutter (UGent) , Dietmar H Pieper and Tom Van de Wiele (UGent)

(2016) PEERJ. 4.
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Bacterial community composition in relation to bedrock type and macrobiota in soils from the Sør Rondane Mountains, East Antarctica

Bjorn Tytgat (UGent) , Elie Verleyen (UGent) , Maxime Sweetlove (UGent) , Sofie D'hondt (UGent) , Pia Clercx (UGent) , Eric Van Ranst (UGent) , Karolien Peeters, Stephen Roberts, Zorigto Namsaraev, Annick Wilmotte, et al.

(2016) FEMS MICROBIOLOGY ECOLOGY. 92(9).
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- Conference Paper
- C3
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Shining a light on exposed high-altitude Antarctic ecosystems provides a clearer view on the diversity of phototrophic bacteria

Guillaume Tahon (UGent) , Bjorn Tytgat (UGent) , Karolien Peeters (UGent) and Anne Willems (UGent)

(2016) BNCGG-BNCAR Antarctica Symposium, Abstracts.

Academic Bibliography

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Strategy and performance evaluation of low-frequency variant calling for SARS-CoV-2 using targeted deep Illumina sequencing

Targeting the 16S rRNA gene for bacterial identification in complex mixed samples : comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies

BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs

Use of next‐generation sequencing in microbial risk assessment

Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Evolutionary dynamics of an expressed MHC class IIβ locus in the Ranidae (Anura) uncovered by genome walking and high-throughput amplicon sequencing

Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene

Bacterial community composition in relation to bedrock type and macrobiota in soils from the Sør Rondane Mountains, East Antarctica

Shining a light on exposed high-altitude Antarctic ecosystems provides a clearer view on the diversity of phototrophic bacteria

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