Ghent University Academic Bibliography

Journal Article
A1
open access

The genome of the king protea, Protea cynaroides

Jiyang Chang (UGent) , Tuan A. Duong, Cassandra Schoeman, Xiao Ma (UGent) , Danielle Roodt, Nigel Barker, Zhen Li (UGent) , Yves Van de Peer (UGent) and Eshchar Mizrachi

(2023) PLANT JOURNAL. 113(2). p.262-276

Add to list

Journal Article
A1
open access

Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2023) METHODS IN ECOLOGY AND EVOLUTION. 14(12). p.2942-2952

Add to list

Journal Article
A1
open access

Transcript- and annotation-guided genome assembly of the European starling

Katarina C. Stuart, Richard J. Edwards, Yuanyuan Cheng, Wesley C. Warren, David W. Burt, William B. Sherwin, Natalie R. Hofmeister, Scott J. Werner, Gregory F. Ball, Melissa Bateson, et al.

(2022) MOLECULAR ECOLOGY RESOURCES. 22(8). p.3141-3160

Add to list

De novo whole-genome assembly and discovery of genes involved in triterpenoid saponin biosynthesis of Vietnamese ginseng (Panax vietnamensis Ha et Grushv.)

Nguyen Quang Duc Tien, Xiao Ma (UGent) , Le Quang Man, Duong Thi Kim Chi, Nguyen Xuan Huy, Duong-Tan Nhut, Stephane Rombauts (UGent) , Tran Ut and Nguyen Hoang Loc

(2021) PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS. 27(10). p.2215-2229

Add to list

Journal Article
A1
open access

A chromosome‐level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

Xiao Ma (UGent) , Fabián E. Vaistij, Yi Li, Willem S. Jansen van Rensburg, Sarah Harvey, Michael W. Bairu, Sonja L. Venter, Sydney Mavengahama, Zemin Ning, Ian A. Graham, et al.

(2021) PLANT JOURNAL. 107(2). p.613-628

Add to list

Journal Article
A1
open access

instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

Lyam Baudry, Nadège Guiglielmoni, Hervé Marie-Nelly, Alexandre Cormier, Martial Marbouty, Komlan Avia, Yann Loe Mie, Olivier Godfroy, Lieven Sterck (UGent) , J. Mark Cock, et al.

(2020) GENOME BIOLOGY. 21(1).

Add to list

Journal Article
A1
open access

High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing

Nick Vereecke (UGent) , Jade Bokma (UGent) , Freddy Haesebrouck (UGent) , Hans Nauwynck (UGent) , Filip Boyen (UGent) , Bart Pardon (UGent) and Sebastiaan Theuns (UGent)

(2020) BMC BIOINFORMATICS. 21(1).

Add to list

Journal Article
A1
open access

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Yao-Cheng Lin (UGent) , Jing Wang, Nicolas Delhomme, Bastian Schiffthaler, Gorel Sundstrom, Andrea Zuccolo, Bjorn Nystedt, Torgeir R Hvidsten, Amanda de la Torre, Rosa M Cossu, et al.

(2018) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 115(46). p.E10970-E10978

Add to list

Journal Article
A1
open access

Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Mahdi Heydari, Giles Miclotte (UGent) , Piet Demeester (UGent) , Yves Van de Peer (UGent) and Jan Fostier (UGent)

(2017) BMC BIOINFORMATICS. 18.

Add to list

Journal Article
A1
open access

Finding the missing honey bee genes: lessons learned from a genome upgrade

Christine G Elsik, Kim C Worley, Anna K Bennett, Martin Beye, Francisco Camara, Christopher P Childers, Dirk de Graaf (UGent) , Griet Debyser (UGent) , Jixin Deng, Bart Devreese (UGent) , et al.

(2014) BMC GENOMICS. 15.

Academic Bibliography

The genome of the king protea, Protea cynaroides

Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package

Transcript- and annotation-guided genome assembly of the European starling

De novo whole-genome assembly and discovery of genes involved in triterpenoid saponin biosynthesis of Vietnamese ginseng (Panax vietnamensis Ha et Grushv.)

A chromosome‐level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Finding the missing honey bee genes: lessons learned from a genome upgrade

Contents

Support

Contact