Ghent University Academic Bibliography

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Radiation-induced cardiovascular disease : an overlooked role for DNA methylation?

Magy Sallam, Mohammed Abderrafi Benotmane, Sarah Baatout (UGent) , Pieter-Jan Guns and An Aerts

(2022) EPIGENETICS. 17(1). p.59-80

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CpG transformer for imputation of single-cell methylomes

Gaetan De Waele (UGent) , Jim Clauwaert (UGent) , Gerben Menschaert (UGent) and Willem Waegeman (UGent)

(2022) BIOINFORMATICS. 38(3). p.597-603

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Epithelial-mesenchymal transition (EMT) as a therapeutic target

Sven Jonckheere (UGent) , Jamie Adams, Dominic De Groote (UGent) , Kyra Campbell, Geert Berx (UGent) and Steven Goossens (UGent)

(2022) CELLS TISSUES ORGANS. 211(2). p.157-182

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Atypical teratoid/rhabdoid tumors (ATRTs) with SMARCA4 mutation are molecularly distinct from SMARCB1-deficient cases

Dörthe Holdhof, Pascal D. Johann, Michael Spohn, Michael Bockmayr, Sepehr Safaei, Piyush Joshi, Julien Masliah-Planchon, Ben Ho, Mamy Andrianteranagna, Franck Bourdeaut, et al.

(2021) ACTA NEUROPATHOLOGICA. 141(2). p.291-301

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High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects

You Song, Jorke Kamstra, Yang Cao, Jana Asselman (UGent) , Marc d'Auriac and Nikolai Friberg

(2021) JOURNAL OF HAZARDOUS MATERIALS. 408.

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Minimally invasive classification of pediatric solid tumors using reduced representation bisulfite sequencing of cell-free DNA : a proof-of-principle study

Ruben Van Paemel (UGent) , Andries De Koker (UGent) , Charlotte Vandeputte (UGent) , Lieke van Zogchel, Tim Lammens (UGent) , Genevieve Laureys (UGent) , Jo Vandesompele (UGent) , Gudrun Schleiermacher, Mathieu Chicard, Nadine Van Roy (UGent) , et al.

(2021) EPIGENETICS. 16(2). p.196-208

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Detection of cytosine methylation in Burkholderia cenocepacia by single- molecule real- time sequencing and whole- genome bisulfite sequencing

Ian Vandenbussche (UGent) , Andrea Sass (UGent) , Filip Van Nieuwerburgh (UGent) , Marta Pinto-Carbo, Olga Mannweiler, Leo Eberl and Tom Coenye (UGent)

(2021) MICROBIOLOGY-SGM. 167(3).

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Changes in DNA methylation in Arabidopsis thaliana plants exposed over multiple generations to gamma radiation

Pol Laanen, Eline Saenen, Mohamed Mysara, Jorden van de Walle, May Van Hees, Robin Nauts, Filip Van Nieuwerburgh (UGent) , Stefan Voorspoels, Griet Jacobs, Ann Cuypers, et al.

(2021) FRONTIERS IN PLANT SCIENCE. 12.

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More than meets the eye : expanding and reviewing the clinical and mutational spectrum of brittle cornea syndrome

Tibbe Dhooge (UGent) , Tim Van Damme (UGent) , Delfien Syx (UGent) , Laura Muiño Mosquera (UGent) , Sheela Nampoothiri, Anil Radhakrishnan, Pelin O. Simsek-Kiper, Gulen E. Utine, Maryse Bonduelle, Isabelle Migeotte, et al.

(2021) HUMAN MUTATION. 42(6). p.711-730

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DECONbench : a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

Clémentine Decamps, Alexis Arnaud, Florent Petitprez, Mira Ayadi, Aurélia Baurès, Lucile Armenoult, N. Alcala, A. Arnaud, Francisco Avila Cobos (UGent) , Luciana Batista, et al.

(2021) BMC BIOINFORMATICS. 22(1).

Academic Bibliography

Radiation-induced cardiovascular disease : an overlooked role for DNA methylation?

CpG transformer for imputation of single-cell methylomes

Epithelial-mesenchymal transition (EMT) as a therapeutic target

Atypical teratoid/rhabdoid tumors (ATRTs) with SMARCA4 mutation are molecularly distinct from SMARCB1-deficient cases

High-throughput analyses and Bayesian network modeling highlight novel epigenetic Adverse Outcome Pathway networks of DNA methyltransferase inhibitor mediated transgenerational effects

Minimally invasive classification of pediatric solid tumors using reduced representation bisulfite sequencing of cell-free DNA : a proof-of-principle study

Detection of cytosine methylation in Burkholderia cenocepacia by single- molecule real- time sequencing and whole- genome bisulfite sequencing

Changes in DNA methylation in Arabidopsis thaliana plants exposed over multiple generations to gamma radiation

More than meets the eye : expanding and reviewing the clinical and mutational spectrum of brittle cornea syndrome

DECONbench : a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

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