Ghent University Academic Bibliography

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Kron reduction in species-reaction graphs of mass-action chemical reaction networks

Manvel Gasparyan (UGent) , Ovidiu Radulescu and Shodhan Rao (UGent)

(2025) Bioinformatics and Computational Biology, 13th International Conference, Proceedings. p.128-133
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- PhD Thesis
Predicting and understanding phage-host interactions with machine learning tools based on phage receptor-binding proteins

Dimitri Boeckaerts

(2023)
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- PhD Thesis
- open access
Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods

Ralf Gabriels (UGent)

(2022)
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Dissecting the conformational dynamics of α-1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and un glycosylated AGP mutants

Bhawna Dixit (UGent) , Wim Vranken and An Ghysels (UGent)

(2022) BACR Annual meeting 2022 : Tumour plasticity and heterogeneity during cancer progression, Abstracts.
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- Journal Article
- A1
- open access
The gene regulation knowledge commons : the action area of GREEKC

Martin Kuiper, Joseph Bonello, Jesualdo T. Fernández-Breis, Philipp Bucher, Matthias E. Futschik, Pascale Gaudet, Ivan V. Kulakovskiy, Luana Licata, Colin Logie, Ruth C. Lovering, et al.

(2022) BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. 1865(1).
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- Conference Paper
- C3
- open access
Backbone dynamics alignment of proteins : harnessing biophysical fingerprints in pairwise sequence alignment

Bhawna Dixit (UGent) and Wim Vranken

(2021) BioSB 2021, Bioinformatics & Systems Biology Conference, Abstracts.
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- Journal Article
- A1
- open access
b2bTools : online predictions for protein biophysical features and their conservation

Luciano Porto Kagami, Gabriele Orlando, Daniele Raimondi, Francois Ancien, Bhawna Dixit (UGent) , Jose Gavaldá-García, Pathmanaban Ramasamy (UGent) , Joel Roca-Martínez, Konstantina Tzavella and Wim Vranken

(2021) NUCLEIC ACIDS RESEARCH. 49(W1). p.W52-W59
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- PhD Thesis
- open access
Exact and efficient algorithms for pairwise learning

Michiel Stock (UGent)

(2017)
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- PhD Thesis
- open access
Network-based identification of driver pathways in clonal systems

Bram Weytjens (UGent)

(2017)
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Enabling computational proteomics by public and local data management systems

Kenny Helsens (UGent) and Lennart Martens (UGent)

(2012) CIRCULATION-CARDIOVASCULAR GENETICS. 5(2). p.O9-O15

Academic Bibliography

Kron reduction in species-reaction graphs of mass-action chemical reaction networks

Predicting and understanding phage-host interactions with machine learning tools based on phage receptor-binding proteins

Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods

Dissecting the conformational dynamics of α-1 acid glycoprotein (AGP) in cancer : a comparative study of glycosylated and un glycosylated AGP mutants

The gene regulation knowledge commons : the action area of GREEKC

Backbone dynamics alignment of proteins : harnessing biophysical fingerprints in pairwise sequence alignment

b2bTools : online predictions for protein biophysical features and their conservation

Exact and efficient algorithms for pairwise learning

Network-based identification of driver pathways in clonal systems

Enabling computational proteomics by public and local data management systems

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