Ghent University Academic Bibliography

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- Journal Article
- A1
- open access
Novel transformer networks for improved sequence labeling in genomics

Jim Clauwaert (UGent) and Willem Waegeman (UGent)

(2022) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 19(1). p.97-106
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- Journal Article
- A1
- open access
The neighborhood of the Spike gene is a hotspot for modular intertypic homologous and nonhomologous recombination in Coronavirus genomes

Marios Nikolaidis, Panayotis Markoulatos, Yves Van de Peer (UGent) , Stephen G Oliver and Grigorios D Amoutzias

(2022) MOLECULAR BIOLOGY AND EVOLUTION. 39(1).
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- PhD Thesis
- open access
Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods

Ralf Gabriels (UGent)

(2022)
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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180
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- Conference Paper
- open access
BioArchLinux: bioinformatics community with Arch Linux

Guoyi Zhang, Michael Elliot, Yujin Hu, Viktor Drobot, Jens Staal (UGent) and Yun Yi

(2022) Bioinformatics Open Source Conference.
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A sequence complementarity-based approach for evaluating off-target transcript knockdown in Bombus terrestris, following ingestion of pest-specific dsRNA

Nji Tizi Clauvis Taning (UGent) , Shunhua Gui (UGent) , Kristof De Schutter (UGent) , Mona Jahani, Nathaly Lara Castellanos, Olivier Christiaens (UGent) and Guy Smagghe (UGent)

(2021) JOURNAL OF PEST SCIENCE. 94(2). p.487-503
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- Journal Article
- A1
- open access
b2bTools : online predictions for protein biophysical features and their conservation

Luciano Porto Kagami, Gabriele Orlando, Daniele Raimondi, Francois Ancien, Bhawna Dixit (UGent) , Jose Gavaldá-García, Pathmanaban Ramasamy (UGent) , Joel Roca-Martínez, Konstantina Tzavella and Wim Vranken

(2021) NUCLEIC ACIDS RESEARCH. 49(W1). p.W52-W59
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- Conference Paper
- C3
- open access
Backbone dynamics alignment of proteins : harnessing biophysical fingerprints in pairwise sequence alignment

Bhawna Dixit (UGent) and Wim Vranken

(2021) BioSB 2021, Bioinformatics & Systems Biology Conference, Abstracts.
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FungalTraits : a user-friendly traits database of fungi and fungus-like stramenopiles

Sergei Polme, Kessy Abarenkov, R. Henrik Nilsson, Bjorn D. Lindahl, Karina Engelbrecht Clemmensen, Havard Kauserud, Nhu Nguyen, Rasmus Kjoller, Scott T. Bates, Petr Baldrian, et al.

(2021) FUNGAL DIVERSITY. 105(1). p.1-16
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Aggregation theory revisited

Raul Perez Fernandez (UGent) and Bernard De Baets (UGent)

(2021) IEEE TRANSACTIONS ON FUZZY SYSTEMS. 29(4). p.797-804

Academic Bibliography

Novel transformer networks for improved sequence labeling in genomics

The neighborhood of the Spike gene is a hotspot for modular intertypic homologous and nonhomologous recombination in Coronavirus genomes

Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

BioArchLinux: bioinformatics community with Arch Linux

A sequence complementarity-based approach for evaluating off-target transcript knockdown in Bombus terrestris, following ingestion of pest-specific dsRNA

b2bTools : online predictions for protein biophysical features and their conservation

Backbone dynamics alignment of proteins : harnessing biophysical fingerprints in pairwise sequence alignment

FungalTraits : a user-friendly traits database of fungi and fungus-like stramenopiles

Aggregation theory revisited

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