Ghent University Academic Bibliography

A sequence complementarity-based approach for evaluating off-target transcript knockdown in Bombus terrestris, following ingestion of pest-specific dsRNA

Nji Tizi Clauvis Taning (UGent) , Shunhua Gui (UGent) , Kristof De Schutter (UGent) , Mona Jahani (UGent) , Nathaly Lara Castellanos (UGent) , Olivier Christiaens (UGent) and Guy Smagghe (UGent)

(2021) JOURNAL OF PEST SCIENCE. 94(2). p.487-503

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MegaGO : a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets

Pieter Verschaffelt (UGent) , Tim Van Den Bossche (UGent) , Wassim Gabriel, Michał Burdukiewicz, Alessio Soggiu, Lennart Martens (UGent) , Bernhard Y. Renard, Henning Schiebenhoefer and Bart Mesuere (UGent)

(2021) JOURNAL OF PROTEOME RESEARCH. 20(4). p.2083-2088

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Journal Article
A1
open access

Computational analysis of microbial flow cytometry data

Peter Rubbens (UGent) and Ruben Props (UGent)

(2021) MSYSTEMS. 6(1).

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Aggregation theory revisited

Raul Perez Fernandez (UGent) and Bernard De Baets (UGent)

(2021) IEEE TRANSACTIONS ON FUZZY SYSTEMS. 29(4). p.797-804

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Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

Kenneth Verheggen (UGent) , Helge Raeder, Frode S Berven, Lennart Martens (UGent) , Harald Barsnes and Marc Vaudel

(2020) MASS SPECTROMETRY REVIEWS. 39(3). p.292-306

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Journal Article
A1
open access

Removing the hidden data dependency of DIA with predicted spectral libraries

Bart Van Puyvelde (UGent) , Sander Willems (UGent) , Ralf Gabriels (UGent) , Simon Daled (UGent) , Laura De Clerck (UGent) , Sofie Vande Casteele (UGent) , An Staes (UGent) , Francis Impens (UGent) , Dieter Deforce (UGent) , Lennart Martens (UGent) , et al.

(2020) PROTEOMICS. 20(3-4).

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PhD Thesis

The proteogenomic hunt for new proteoforms using ribosome profiling

Steven Verbruggen (UGent)

(2020)

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ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Niels Hulstaert (UGent) , Jim Shofstahl, Timo Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens (UGent) and Yasset Perez-Riverol

(2020) JOURNAL OF PROTEOME RESEARCH. 19(1). p.537-542

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Conference Paper
C3
open access

The HUPO-PSI standardized spectral library format

Ralf Gabriels (UGent) , Nuno Bandeira, Wout Bittremieux, Jeremy J Carver, Matthew Chambers, Shin Kawano, Henry Lam, Tytus Mak, Yasset Perez-Riverol, Benjamin J Pullman, et al.

(2020) EuBIC 2020 developers' meeting.

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Journal Article
A1
open access

Biosafety of GM crop plants expressing dsRNA : data requirements and EU regulatory considerations

Salvatore Arpaia, Olivier Christiaens (UGent) , Kara Giddings, Huw Jones, Bruno Mezzetti, Felix Moronta-Barrios, Joe N. Perry, Jeremy B. Sweet, Nji Tizi Clauvis Taning (UGent) , Guy Smagghe (UGent) , et al.

(2020) FRONTIERS IN PLANT SCIENCE. 11.

Academic Bibliography

A sequence complementarity-based approach for evaluating off-target transcript knockdown in Bombus terrestris, following ingestion of pest-specific dsRNA

MegaGO : a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets

Computational analysis of microbial flow cytometry data

Aggregation theory revisited

Anatomy and evolution of database search engines : a central component of mass spectrometry based proteomic workflows

Removing the hidden data dependency of DIA with predicted spectral libraries

The proteogenomic hunt for new proteoforms using ribosome profiling

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

The HUPO-PSI standardized spectral library format

Biosafety of GM crop plants expressing dsRNA : data requirements and EU regulatory considerations

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