Ghent University Academic Bibliography

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ACTER terminology annotation guidelines

Ayla Rigouts Terryn (UGent)

(2021)
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- Journal Article
- A1
- open access
Maize specialized metabolome networks reveal organ-preferential mixed glycosides

Sandrien Desmet (UGent) , Yvan Saeys (UGent) , Kevin Verstaen (UGent) , Rebecca Dauwe (UGent) , Hoon Kim, Claudiu Niculaes (UGent) , Atsushi Fukushima, Geert Goeminne (UGent) , Ruben Vanholme (UGent) , John Ralph, et al.

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.1127-1144
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- Journal Article
- A1
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Seeing the forest for the trees : retrieving plant secondary biochemical pathways from metabolome networks

Sandrien Desmet (UGent) , Marlies Brouckaert (UGent) , Wout Boerjan (UGent) and Kris Morreel (UGent)

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.72-85
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Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

Robin Guevarra (UGent) , Stefan Magez (UGent) , Eveline Peeters, Mi Sook Chung, Kyung Hyun Kim and Magdalena Radwanska (UGent)

(2021) PLOS ONE. 16(1).
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A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies

Junha Shin, Harald Marx, Alicia Richards, Dries Vaneechoutte, Dhileepkumar Jayaraman, Junko Maeda, Sanhita Chakraborty, Michael Sussman, Klaas Vandepoele (UGent) , Jean-Michel Ané, et al.

(2021) NUCLEIC ACIDS RESEARCH. 49(1).
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Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production

Chi Song, Fangfang Fu, Lulu Yang, Yan Niu, Zhaoyang Tian, Xiangxiang He, Xiaoming Yang, Jie Chen, Wei Sun, Tao Wan, et al.

(2021) COMMUNICATIONS BIOLOGY. 4(1).
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A chromosome‐level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

Xiao Ma (UGent) , Fabián E. Vaistij, Yi Li, Willem S. Jansen van Rensburg, Sarah Harvey, Michael W. Bairu, Sonja L. Venter, Sydney Mavengahama, Zemin Ning, Ian A. Graham, et al.

(2021) PLANT JOURNAL. 107(2). p.613-628
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RNAcentral 2021 : secondary structure integration, improved sequence search and new member databases

Blake A. Sweeney, I Petrov, Anton, Carlos E. Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, et al.

(2021) NUCLEIC ACIDS RESEARCH. 49(D1). p.D212-D220
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- Journal Article
- A2
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Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)

Xiao Ma (UGent) , Jeanine L. Olsen, Thorsten B.H. Reusch, Gabriele Procaccini, Dave Kudrna, Melissa Williams, Jane Grimwood, Shanmugam Rajasekar, Jerry Jenkins, Jeremy Schmutz, et al.

(2021) F1000RESEARCH. 10.
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Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation

Yong‐Peng Ma, Hafiz Muhammad Wariss, Rong‐Li Liao, Ren‐Gang Zhang, Quan‐Zheng Yun, Richard G. Olmstead, John H. Chau, Richard I. Milne, Yves Van de Peer (UGent) and Wei‐Bang Sun

(2021) NEW PHYTOLOGIST. 232(3). p.1463-1476

Academic Bibliography

ACTER terminology annotation guidelines

Maize specialized metabolome networks reveal organ-preferential mixed glycosides

Seeing the forest for the trees : retrieving plant secondary biochemical pathways from metabolome networks

Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies

Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production

A chromosome‐level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop

RNAcentral 2021 : secondary structure integration, improved sequence search and new member databases

Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)

Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation

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