Ghent University Academic Bibliography

Miscellaneous
open access

ACTER terminology annotation guidelines

Ayla Rigouts Terryn (UGent)

(2021)

Journal Article
A1
open access

Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

Robin Guevarra, Stefan Magez (UGent) , Eveline Peeters, Mi Sook Chung, Kyung Hyun Kim and Magdalena Radwanska (UGent)

(2021) PLOS ONE. 16(1).

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Journal Article
A1
open access

Draft genomes of two Artocarpus plants, jackfruit (A. heterophyllus) and breadfruit (A. altilis)

Sunil Kumar Sahu, Min Liu, Anna Yssel, Robert Kariba, Samuel Muthemba, Sanjie Jiang, Bo Song, Prasad S. Hendre, Alice Muchugi, Ramni Jamnadass, et al.

(2020) GENES. 11(1).

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Journal Article
A1
open access

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M Hess, Randi Istrup Juul, Ziao Lin, et al.

(2020) NATURE. 578(7793). p.102-111

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Evaluating the potential of direct RNA nanopore sequencing : metatranscriptomics highlights possible seasonal differences in a marine pelagic crustacean zooplankton community

Ilias Semmouri (UGent) , Karel De Schamphelaere (UGent) , Jan Mees (UGent) , Colin Janssen (UGent) and Jana Asselman (UGent)

(2020) MARINE ENVIRONMENTAL RESEARCH. 153.

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Reduced stress defense responses contribute to the higher toxicity of a pesticide under warming

Vienna Delnat, Janne Swaegers (UGent) , Jana Asselman (UGent) and Robby Stoks

(2020) MOLECULAR ECOLOGY. 29(23). p.4735-4748

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Journal Article
A1
open access

instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

Lyam Baudry, Nadège Guiglielmoni, Hervé Marie-Nelly, Alexandre Cormier, Martial Marbouty, Komlan Avia, Yann Loe Mie, Olivier Godfroy, Lieven Sterck (UGent) , J. Mark Cock, et al.

(2020) GENOME BIOLOGY. 21(1).

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Journal Article
A1
open access

The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms

Cristina Osuna (UGent) , Gust Bilcke (UGent) , Emmelien Vancaester (UGent) , Sam De Decker (UGent) , Atle M. Bones, Per Winge, Nicole Poulsen, Petra Bulánková (UGent) , Bram Verhelst (UGent) , Sien Audoor (UGent) , et al.

(2020) NATURE COMMUNICATIONS. 11(1).

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Leeuwenhoekiella aestuarii sp. nov., isolated from salt-water sediment and first insights in the genomes of Leeuwenhoekiella species

Guillaume Tahon (UGent) , Liesbeth Lebbe (UGent) , Marleen De Troch (UGent) , Koen Sabbe (UGent) and Anne Willems (UGent)

(2020) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 70(3). p.1706-1719

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Spatio-temporal patterns in the gene expression of the calanoid copepod Temora longicornis in the Belgian part of the North Sea

Ilias Semmouri (UGent) , Karel De Schamphelaere (UGent) , Filip Van Nieuwerburgh (UGent) , Dieter Deforce (UGent) , Colin Janssen (UGent) and Jana Asselman (UGent)

(2020) MARINE ENVIRONMENTAL RESEARCH. 160.

Academic Bibliography

ACTER terminology annotation guidelines

Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

Draft genomes of two Artocarpus plants, jackfruit (A. heterophyllus) and breadfruit (A. altilis)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Evaluating the potential of direct RNA nanopore sequencing : metatranscriptomics highlights possible seasonal differences in a marine pelagic crustacean zooplankton community

Reduced stress defense responses contribute to the higher toxicity of a pesticide under warming

instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms

Leeuwenhoekiella aestuarii sp. nov., isolated from salt-water sediment and first insights in the genomes of Leeuwenhoekiella species

Spatio-temporal patterns in the gene expression of the calanoid copepod Temora longicornis in the Belgian part of the North Sea

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