Ghent University Academic Bibliography

Journal Article
A1
open access

Diet composition drives tissue-specific intensity of murine enteric infections

Helene Israelson, Amalie Vedsted-Jakobsen, Ling Zhu, Aurélie Gagnaire (UGent) , Alexandra von Muenchow, Nina Polakovicova, Angela H. Valente, Ali Raza, Audrey I. S. Andersen-Civil, John E. Olsen, et al.

(2024) MBIO. 15(2).

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Journal Article
A1
open access

Getting clues from nature : the impact of grass hay on suckling piglets’ gastrointestinal growth and colonic microbiota

Renjie Yao (UGent) , An Cools (UGent) , Hubèrt M. J. van Hees, Koen Chiers, Awot Teklu Mebratu (UGent) , Marijke Aluwé, Dominiek Maes (UGent) and Geert Janssens (UGent)

(2024) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 13.

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Journal Article
A1
open access

Towards a rational approach to promoter engineering : understanding the complexity of transcription initiation in prokaryotes

Cara Deal (UGent) , Lien De Wannemaeker (UGent) and Marjan De Mey (UGent)

(2024) FEMS MICROBIOLOGY REVIEWS. 48(2).

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Journal Article
A1
open access

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Florence Buytaers, Bavo Verhaegen (UGent) , Tom Van Nieuwenhuysen (UGent) , Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2024) FRONTIERS IN MICROBIOLOGY. 15.

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Journal Article
A1
open access

MSDeepAMR : antimicrobial resistance prediction based on deep neural networks and transfer learning

Xaviera A. Lopez-Cortes, Jose M. Manriquez-Troncoso, Ruber Hernandez-Garcia and Daniel Peralta (UGent)

(2024) FRONTIERS IN MICROBIOLOGY. 15.

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Journal Article
A1
open access

Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities

Gleb Goussarov, Mohamed Mysara, Ilse Cleenwerck (UGent) , Jürgen Claesen, Natalie Leys, Peter Vandamme (UGent) and Rob Van Houdt

(2024) MICROBIOLOGY. 170(6).

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Proposal of three novel insect-associated Commensalibacter species : Commensalibacter melissae sp. nov., Commensalibacter communis sp. nov. and Commensalibacter papalotli sp. nov.

Juliana Botero Cardona (UGent) and Peter Vandamme (UGent)

(2024) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 74(1).

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The best of both worlds : a proposal for further integration of Candidatus names into the International Code of Nomenclature of Prokaryotes

David Arahal, Magne Bisgaard, Henrik Christensen, Dominique Clermont, Lenie Dijkshoorn, Birgitta Duim, Stefan Emler, Marian Figge, Markus Göker, Edward R. B. Moore, et al.

(2024) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 74(1).

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Journal Article
A1
open access

Real-time flow cytometry to assess qualitative and quantitative responses of oral pathobionts during exposure to antiseptics

Ioanna Chatzigiannidou, Jasmine Heyse (UGent) , Ruben Props (UGent) , Peter Rubbens, Fabian Mermans (UGent) , Wim Teughels, Tom Van de Wiele (UGent) and Nico Boon (UGent)

(2024) MICROBIOLOGY SPECTRUM. 12(10).

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Journal Article
A1
open access

Exploring the genetic diversity of Mycoplasma hyopneumoniae in pigs with pneumonia and pleurisy at slaughter

Ana Karolina Panneitz, Eduarda Ribeiro Braga, Fernando Antonio Moreira Petri, Jean Carlo Olivo Menegatt, David Driemeier, Dominiek Maes (UGent) and Luis Guilherme de Oliveira

(2024) MICROORGANISMS. 12(10).

Academic Bibliography

Diet composition drives tissue-specific intensity of murine enteric infections

Getting clues from nature : the impact of grass hay on suckling piglets’ gastrointestinal growth and colonic microbiota

Towards a rational approach to promoter engineering : understanding the complexity of transcription initiation in prokaryotes

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

MSDeepAMR : antimicrobial resistance prediction based on deep neural networks and transfer learning

Benchmarking short-, long- and hybrid-read assemblers for metagenome sequencing of complex microbial communities

Proposal of three novel insect-associated Commensalibacter species : Commensalibacter melissae sp. nov., Commensalibacter communis sp. nov. and Commensalibacter papalotli sp. nov.

The best of both worlds : a proposal for further integration of Candidatus names into the International Code of Nomenclature of Prokaryotes

Real-time flow cytometry to assess qualitative and quantitative responses of oral pathobionts during exposure to antiseptics

Exploring the genetic diversity of Mycoplasma hyopneumoniae in pigs with pneumonia and pleurisy at slaughter

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